Research
Epigenetic characterization of pseudogenes across human tissues
- First Published April 15, 2026
Research
Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Research
Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection
- First Published December 13, 2017
Research
Novel H3K4me3 marks are enriched at human- and chimpanzee-specific cytogenetic structures
- First Published June 10, 2014
Research
Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
- First Published September 11, 2013
Research
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Method
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- First Published September 5, 2012
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Resource
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- First Published February 7, 2011
Research
C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
- First Published December 22, 2010
Research
The effect of translocation-induced nuclear reorganization on gene expression
- First Published March 8, 2010
Methods
MSB: A mean-shift-based approach for the analysis of structural variation in the genome
- First Published November 26, 2008
LETTER
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
- First Published May 16, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
RESOURCE
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21
- First Published September 25, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Tandem chimerism as a means to increase protein complexity in the human genome
- First Published December 12, 2005
LETTER
Assessing the limits of genomic data integration for predicting protein networks
- First Published July 5, 2005
LETTER
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
- First Published May 2, 2005
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
LETTER
Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
- First Published December 1, 2003
METHODS
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
- First Published April 1, 2003
LETTER
Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons
- First Published November 1, 2002
ARTICLE
Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
- First Published October 1, 2002
LETTER
Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
- First Published February 1, 2002
LETTER
Relating Whole-Genome Expression Data with Protein-Protein Interactions
- First Published January 1, 2002
LETTER
Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins
- First Published October 1, 2001
INSIGHT/OUTLOOK
Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function
- First Published September 1, 2001
LETTER
Whole-genome Trees Based on the Occurrence of Folds and Orthologs: Implications for Comparing Genomes on Different Levels
- First Published June 1, 2000