Method
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
- First Published July 11, 2023
Research
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
- First Published June 29, 2021
Research
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
- First Published November 6, 2018
Research
Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection
- First Published December 13, 2017
Corrigendum
Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published October 3, 2016
Research
Novel H3K4me3 marks are enriched at human- and chimpanzee-specific cytogenetic structures
- First Published June 10, 2014
Method
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- First Published September 5, 2012
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Research
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published March 28, 2012
Research
A matter of life or death: How microsatellites emerge in and vanish from the human genome
- First Published October 12, 2011
Research
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Research
The effect of translocation-induced nuclear reorganization on gene expression
- First Published March 8, 2010
Article
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
- First Published November 3, 2009
Resource
Windshield splatter analysis with the Galaxy metagenomic pipeline
- First Published October 9, 2009
Letter
Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions
- First Published June 5, 2009
LETTER
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
- First Published September 25, 2008
LETTER
The genome-wide determinants of human and chimpanzee microsatellite evolution
- First Published November 21, 2007
RESOURCE
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21
- First Published September 25, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
Methods
ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
- First Published October 19, 2006
LETTER
cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules
- First Published October 12, 2006
LETTER
Tandem chimerism as a means to increase protein complexity in the human genome
- First Published December 12, 2005
Methods
Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat
- First Published April 1, 2004
LETTER
Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents
- First Published April 1, 2004
ARTICLE
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
LETTER
Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
- First Published January 1, 2003
ARTICLE
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003