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Research

Enhancers display constrained sequence flexibility and context-specific modulation of motif function

  • Franziska Reiter
  • Bernardo P. de Almeida
  • Alexander Stark
  • First Published March 20, 2023
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Research

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features

  • J. Omar Yáñez-Cuna
  • Cosmas D. Arnold
  • Gerald Stampfel
  • Łukasz M. Boryń
  • Daniel Gerlach
  • Martina Rath
  • Alexander Stark
  • First Published April 8, 2014
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Method

cis-regulatory sequence requirements for context-specific transcription factor binding" > Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding

  • J. Omar Yáñez-Cuna
  • Huy Q. Dinh
  • Evgeny Z. Kvon
  • Daria Shlyueva
  • Alexander Stark
  • First Published April 25, 2012
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
Platypus Special/Letter

Conservation of small RNA pathways in platypus

  • Elizabeth P. Murchison
  • Pouya Kheradpour
  • Ravi Sachidanandam
  • Carly Smith
  • Emily Hodges
  • Zhenyu Xuan
  • ... [+1 authors] ...,
  • Manolis Kellis
  • Frank Grützner
  • Alexander Stark
  • Gregory J. Hannon
  • First Published May 7, 2008
12 | Genomes/Methods

Drosophila genomes" > Reliable prediction of regulator targets using 12 Drosophila genomes

  • Pouya Kheradpour
  • Alexander Stark
  • Sushmita Roy
  • Manolis Kellis
  • First Published November 7, 2007
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