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Research

NAHR-mediated copy-number variants in a clinical population: Mechanistic insights into both genomic disorders and Mendelizing traits

Piotr Dittwald
Tomasz Gambin
Przemyslaw Szafranski
Jian Li
Stephen Amato
Michael Y. Divon Lisa Ximena Rodríguez Rojas Lindsay E. Elton Daryl A. Scott Christian P. Schaaf Wilfredo Torres-Martinez Abby K. Stevens Jill A. Rosenfeld Satish Agadi David Francis Sung-Hae L. Kang Amy Breman Seema R. Lalani Carlos A. Bacino Weimin Bi Aleksandar Milosavljevic Arthur L. Beaudet Ankita Patel Chad A. Shaw
... [+19 authors] ...,
James R. Lupski
Anna Gambin
Sau Wai Cheung
Pawel Stankiewicz

First Published May 8, 2013

Method

Spark: A navigational paradigm for genomic data exploration

Cydney B. Nielsen
Hamid Younesy
Henriette O'Geen
Xiaoqin Xu
Andrew R. Jackson
Aleksandar Milosavljevic Ting Wang
... [+2 authors] ...,
Joseph F. Costello
Martin Hirst
Peggy J. Farnham
Steven J.M. Jones

First Published September 7, 2012

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

LETTER

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

Oliver A. Hampton
Petra Den Hollander
Christopher A. Miller
David A. Delgado
Jian Li
Cristian Coarfa Ronald A. Harris Stephen Richards Steven E. Scherer
... [+4 authors] ...,
Donna M. Muzny
Richard A. Gibbs
Adrian V. Lee
Aleksandar Milosavljevic

First Published December 3, 2008

LETTER

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

Albino Bacolla
Jacquelynn E. Larson
Jack R. Collins
Jian Li
Aleksandar Milosavljevic
Peter D. Stenson
David N. Cooper
Robert D. Wells

First Published August 7, 2008

Methods

Pooled genomic indexing of rhesus macaque

Aleksandar Milosavljevic
Ronald A. Harris
Erica J. Sodergren
Andrew R. Jackson
Ken J. Kalafus
Anne Hodgson Andrew Cree Weilie Dai Miklos Csuros
... [+4 authors] ...,
Baoli Zhu
Pieter J. de Jong
George M. Weinstock
Richard A. Gibbs

First Published February 1, 2005

Methods

Pash: Efficient Genome-Scale Sequence Anchoring by Positional Hashing

Ken J. Kalafus
Andrew R. Jackson
Aleksandar Milosavljevic

First Published April 1, 2004