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Research

Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development

  • Patricia Gerdes
  • Dorothy Chan
  • Mischa Lundberg
  • Francisco J. Sanchez-Luque
  • Gabriela O. Bodea
  • Adam D. Ewing
  • Geoffrey J. Faulkner
  • Sandra R. Richardson
  • First Published October 5, 2023
Method

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

  • Michiel de Hoon
  • Alessandro Bonetti
  • Charles Plessy
  • Yoshinari Ando
  • Chung-Chau Hon
  • Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
  • ... [+13 authors] ...,
  • Alistair R.R. Forrest
  • Yoshihide Hayashizaki
  • Juha Kere
  • Piero Carninci
  • First Published August 12, 2022
Research

Somatic retrotransposition in the developing rhesus macaque brain

  • Victor Billon
  • Francisco J. Sanchez-Luque
  • Jay Rasmussen
  • Gabriela O. Bodea
  • Daniel J. Gerhardt
  • Patricia Gerdes Seth W. Cheetham Stephanie N. Schauer Prabha Ajjikuttira Thomas J. Meyer Cora E. Layman Kimberly A. Nevonen Natasha Jansz Jose L. Garcia-Perez
  • ... [+9 authors] ...,
  • Sandra R. Richardson
  • Adam D. Ewing
  • Lucia Carbone
  • Geoffrey J. Faulkner
  • First Published June 21, 2022
Research

A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

  • Elisabeth J. van Bree
  • Rita L.F.P. Guimarães
  • Mischa Lundberg
  • Elena R. Blujdea
  • Jimi L. Rosenkrantz
  • Fred T.G. White Josse Poppinga Paula Ferrer-Raventós Anne-Fleur E. Schneider Isabella Clayton David Haussler Marcel J.T. Reinders
  • ... [+7 authors] ...,
  • Henne Holstege
  • Adam D. Ewing
  • Colette Moses
  • Frank M.J. Jacobs
  • First Published March 24, 2022
Research

Comparative transcriptomics of primary cells in vertebrates

  • Tanvir Alam
  • Saumya Agrawal
  • Jessica Severin
  • Robert S. Young
  • Robin Andersson
  • Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
  • ... [+16 authors] ...,
  • Levon M. Khachigian
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Michiel J.L. de Hoon
  • First Published July 27, 2020
Research

L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis

  • Stephanie N. Schauer
  • Patricia E. Carreira
  • Ruchi Shukla
  • Daniel J. Gerhardt
  • Patricia Gerdes
  • Francisco J. Sanchez-Luque Paola Nicoli Michaela Kindlova Serena Ghisletti Alexandre Dos Santos Delphine Rapoud Didier Samuel
  • ... [+7 authors] ...,
  • Jamila Faivre
  • Adam D. Ewing
  • Sandra R. Richardson
  • Geoffrey J. Faulkner
  • First Published April 11, 2018
Research

Heritable L1 retrotransposition in the mouse primordial germline and early embryo

  • Sandra R. Richardson
  • Patricia Gerdes
  • Daniel J. Gerhardt
  • Francisco J. Sanchez-Luque
  • Gabriela-Oana Bodea
  • Martin Muñoz-Lopez J. Samuel Jesuadian Marie-Jeanne H.C. Kempen Patricia E. Carreira Jeffrey A. Jeddeloh
  • ... [+5 authors] ...,
  • Jose L. Garcia-Perez
  • Haig H. Kazazian
  • Adam D. Ewing
  • Geoffrey J. Faulkner
  • First Published May 8, 2017
Research

Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution

  • Adam D. Ewing
  • Anthony Gacita
  • Laura D. Wood
  • Florence Ma
  • Dongmei Xing
  • Min-Sik Kim Srikanth S. Manda Gabriela Abril Gavin Pereira Alvin Makohon-Moore Leendert H.J. Looijenga Ad J.M. Gillis Ralph H. Hruban Robert A. Anders Katharine E. Romans Akhilesh Pandey Christine A. Iacobuzio-Donahue
  • ... [+12 authors] ...,
  • Bert Vogelstein
  • Kenneth W. Kinzler
  • Haig H. Kazazian
  • Szilvia Solyom
  • First Published August 10, 2015
Research

The frequent evolutionary birth and death of functional promoters in mouse and human

  • Robert S. Young
  • Yoshihide Hayashizaki
  • Robin Andersson
  • Albin Sandelin
  • Hideya Kawaji
  • Masayoshi Itoh Timo Lassmann
  • ... [+2 authors] ...,
  • Piero Carninci
  • Wendy A. Bickmore
  • Alistair R. Forrest
  • Martin S. Taylor
  • First Published July 30, 2015
Method

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

  • Hideya Kawaji
  • Marina Lizio
  • Masayoshi Itoh
  • Mutsumi Kanamori-Katayama
  • Ai Kaiho
  • Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
  • ... [+8 authors] ...,
  • Shohei Noma
  • Yoshihide Hayashizaki
  • Alistair R.R. Forrest
  • Piero Carninci
  • First Published March 27, 2014
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