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Resource

Complete sequencing of medaka genomes reveals the architecture of centromeric satellites, giant mobile elements, and sex chromosomes

Yoshihiko Suzuki
Kazuki Ichikawa
Yusuke Inoue
Chie Owa
Haruka Kobayashi
Kenji Morikami Ryohei Nakamura Takafumi Ikeda Manabu Fujie Mayumi Kawamitsu Nana Arakaki Eugene W. Myers Hiroyuki Aburatani Yusuke Takehana Masaru Matsuda
... [+10 authors] ...,
Kiyoshi Naruse
Shigehiro Kuraku
Hiroyuki Takeda
Shinichi Morishita

First Published July 1, 2026

Resource

CGC1, a new reference genome for Caenorhabditis elegans

Kazuki Ichikawa
Massa J. Shoura
Karen L. Artiles
Dae-Eun Jeong
Chie Owa
Haruka Kobayashi Yoshihiko Suzuki Manami Kanamori Yu Toyoshima Yuichi Iino Ann E. Rougvie
... [+6 authors] ...,
Lamia Wahba
Andrew Z. Fire
Erich M. Schwarz
Shinichi Morishita

First Published July 15, 2025

Resource

Recompleting the Caenorhabditis elegans genome

Jun Yoshimura
Kazuki Ichikawa
Massa J. Shoura
Karen L. Artiles
Idan Gabdank
Lamia Wahba Cheryl L. Smith Mark L. Edgley
... [+3 authors] ...,
Ann E. Rougvie
Andrew Z. Fire
Shinichi Morishita
Erich M. Schwarz

First Published May 23, 2019

Resource

The transcription start site landscape of C. elegans

Taro Leo Saito
Shin-ichi Hashimoto
Sam Guoping Gu
J. Jason Morton
Michael Stadler
Thomas Blumenthal
Andrew Fire
Shinichi Morishita

First Published May 1, 2013

Resource

The completion of the Mammalian Gene Collection (MGC)

Gary Temple
Daniela S. Gerhard
Rebekah Rasooly
Elise A. Feingold
Peter J. Good
Cristen Robinson Allison Mandich Jeffrey G. Derge Jeanne Lewis Debonny Shoaf Francis S. Collins Wonhee Jang Lukas Wagner Carolyn M. Shenmen Leonie Misquitta Carl F. Schaefer Kenneth H. Buetow Tom I. Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L. Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D. Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L.G. Comstock Michael Stevens Chaochun Wei Marijke J. van Baren Kourosh Salehi-Ashtiani Ryan R. Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E. Gruber Mark R. Smith John McPherson Angela M. Garcia Preethi H. Gunaratne Jiaqian Wu Donna Muzny Richard A. Gibbs Alice C. Young Gerard G. Bouffard Robert W. Blakesley Jim Mullikin Eric D. Green Mark C. Dickson Alex C. Rodriguez Jane Grimwood Jeremy Schmutz Richard M. Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A. Moore Michael Mayo Sarah Munro Susan Wagner Steven J.M. Jones Robert A. Holt Marco A. Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C. Pulido Keith Robison Dominic Esposito James Hartley
... [+118 authors] ...,
Vanessa E. Wall
Ralph F. Hopkins
Osamu Ohara
Stefan Wiemann

First Published September 18, 2009

Resource

Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing

Wei Qu
Shin-ichi Hashimoto
Shinichi Morishita

First Published May 13, 2009

Resource

ABySS: A parallel assembler for short read sequence data

Jared T. Simpson
Kim Wong
Shaun D. Jackman
Jacqueline E. Schein
Steven J.M. Jones
İnanç Birol

First Published February 27, 2009