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Charting the regulatory landscape of TP53 on transposable elements in cancer

  • Xuan Qu
  • Yonghao Liang
  • Colin McCornack
  • Xiaoyun Xing
  • Heather Schmidt
  • Chad Tomlinson
  • ... [+1 authors] ...,
  • Catrina Fronick
  • Edward A. Belter
  • Juan F. Macias-Velasco
  • Ting Wang
  • First Published May 13, 2025
Resource

Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser

  • Jiawei Shen
  • Siyuan Cheng
  • Deepak Purushotham
  • Xiaoyu Zhuo
  • Alan Y Du
  • Wenjin Zhang
  • Daofeng Li
  • Ting Wang
  • First Published February 21, 2025
Resource

Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

  • Yujie Chen
  • Yiran Hou
  • Qinglin Zeng
  • Irene Wang
  • Meiru Shang
  • Kwangdeok Shin Christopher Hemauer
  • ... [+2 authors] ...,
  • Xiaoyun Xing
  • Junsu Kang
  • Guoyan Zhao
  • Ting Wang
  • First Published January 14, 2025
Resource

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser

  • Xiaoyu Zhuo
  • Silas Hsu
  • Deepak Purushotham
  • Prashant Kumar Kuntala
  • Jessica K. Harrison
  • Alan Y. Du
  • Samuel Chen
  • Daofeng Li
  • Ting Wang
  • First Published May 8, 2023
Resource

cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish" > Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish

  • Hyung Joo Lee
  • Yiran Hou
  • Ju Heon Maeng
  • Nakul M. Shah
  • Yujie Chen
  • Heather A. Lawson
  • Hongbo Yang
  • Feng Yue
  • Ting Wang
  • First Published June 1, 2022
Resource

Drosophila melanogaster" > Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

  • Matthew Slattery
  • Lijia Ma
  • Rebecca F. Spokony
  • Robert K. Arthur
  • Pouya Kheradpour
  • Anshul Kundaje Nicolas Nègre Alex Crofts Ryan Ptashkin Jennifer Zieba Alexander Ostapenko Sarah Suchy Alec Victorsen Nader Jameel A. Jason Grundstad Wenxuan Gao Jennifer R. Moran
  • ... [+12 authors] ...,
  • E. Jay Rehm
  • Robert L. Grossman
  • Manolis Kellis
  • Kevin P. White
  • First Published July 1, 2014
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
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