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Resource

Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser

Jiawei Shen
Siyuan Cheng
Deepak Purushotham
Xiaoyu Zhuo
Alan Y Du
Wenjin Zhang
Daofeng Li
Ting Wang

First Published February 21, 2025

Resource

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser

Xiaoyu Zhuo
Silas Hsu
Deepak Purushotham
Prashant Kumar Kuntala
Jessica K. Harrison
Alan Y. Du
Samuel Chen
Daofeng Li
Ting Wang

First Published May 8, 2023

Resource

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Andrea Pauli
Eivind Valen
Michael F. Lin
Manuel Garber
Nadine L. Vastenhouw
Joshua Z. Levin Lin Fan
... [+2 authors] ...,
Albin Sandelin
John L. Rinn
Aviv Regev
Alexander F. Schier

First Published November 22, 2011

Resource

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

Kim D. Pruitt
Jennifer Harrow
Rachel A. Harte
Craig Wallin
Mark Diekhans
Donna R. Maglott Steve Searle Catherine M. Farrell Jane E. Loveland Barbara J. Ruef Elizabeth Hart Marie-Marthe Suner Melissa J. Landrum Bronwen Aken Sarah Ayling Robert Baertsch Julio Fernandez-Banet Joshua L. Cherry Val Curwen Michael DiCuccio Manolis Kellis Jennifer Lee Michael F. Lin Michael Schuster Andrew Shkeda Clara Amid Garth Brown Oksana Dukhanina Adam Frankish Jennifer Hart Bonnie L. Maidak Jonathan Mudge Michael R. Murphy Terence Murphy Jeena Rajan Bhanu Rajput Lillian D. Riddick Catherine Snow Charles Steward David Webb Janet A. Weber Laurens Wilming Wenyu Wu Ewan Birney David Haussler
... [+40 authors] ...,
Tim Hubbard
James Ostell
Richard Durbin
David Lipman

First Published June 4, 2009