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Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • Yu Lin
  • Jing Li
  • Yiren Gu
  • Long Jin
  • Jingyi Bai
  • Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
  • ... [+28 authors] ...,
  • Liangpeng Ge
  • Xuewei Li
  • Qianzi Tang
  • Mingzhou Li
  • First Published March 13, 2024
Resource

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

  • Mingzhou Li
  • Lei Chen
  • Shilin Tian
  • Yu Lin
  • Qianzi Tang
  • Xuming Zhou Diyan Li Carol K.L. Yeung Tiandong Che Long Jin Yuhua Fu Jideng Ma Xun Wang Anan Jiang Jing Lan Qi Pan Yingkai Liu Zonggang Luo Zongyi Guo Haifeng Liu Li Zhu Surong Shuai Guoqing Tang Jiugang Zhao Yanzhi Jiang Lin Bai Shunhua Zhang Miaomiao Mai Changchun Li Dawei Wang Yiren Gu Guosong Wang Hongfeng Lu Yan Li Haihao Zhu Zongwen Li Ming Li Vadim N. Gladyshev Zhi Jiang
  • ... [+34 authors] ...,
  • Shuhong Zhao
  • Jinyong Wang
  • Ruiqiang Li
  • Xuewei Li
  • First Published September 19, 2016
Resource

Alignathon: a competitive assessment of whole-genome alignment methods

  • Dent Earl
  • Ngan Nguyen
  • Glenn Hickey
  • Robert S. Harris
  • Stephen Fitzgerald
  • Kathryn Beal Igor Seledtsov Vladimir Molodtsov Brian J. Raney Hiram Clawson Jaebum Kim Carsten Kemena Jia-Ming Chang Ionas Erb Alexander Poliakov Minmei Hou Javier Herrero William James Kent Victor Solovyev Aaron E. Darling Jian Ma Cedric Notredame
  • ... [+17 authors] ...,
  • Michael Brudno
  • Inna Dubchak
  • David Haussler
  • Benedict Paten
  • First Published October 1, 2014
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
Resource

Cactus: Algorithms for genome multiple sequence alignment

  • Benedict Paten
  • Dent Earl
  • Ngan Nguyen
  • Mark Diekhans
  • Daniel Zerbino
  • David Haussler
  • First Published June 10, 2011
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