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Resource

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

Yang Zhou
Lv Yang
Xiaotao Han
Jiazheng Han
Yan Hu
Fan Li Han Xia Lingwei Peng Clarissa Boschiero Benjamin D. Rosen Derek M. Bickhart Shujun Zhang Aizhen Guo
... [+8 authors] ...,
Curtis P. Van Tassell
Timothy P.L. Smith
Liguo Yang
George E. Liu

First Published August 17, 2022

Resource

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

Lingzhao Fang
Wentao Cai
Shuli Liu
Oriol Canela-Xandri
Yahui Gao
Jicai Jiang Konrad Rawlik Bingjie Li Steven G. Schroeder Benjamin D. Rosen Cong-jun Li Tad S. Sonstegard Leeson J. Alexander Curtis P. Van Tassell Paul M. VanRaden John B. Cole Ying Yu
... [+12 authors] ...,
Shengli Zhang
Albert Tenesa
Li Ma
George E. Liu

First Published May 18, 2020

Resource

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

Rei Kajitani
Kouta Toshimoto
Hideki Noguchi
Atsushi Toyoda
Yoshitoshi Ogura
Miki Okuno Mitsuru Yabana Masayuki Harada Eiji Nagayasu Haruhiko Maruyama
... [+5 authors] ...,
Yuji Kohara
Asao Fujiyama
Tetsuya Hayashi
Takehiko Itoh

First Published April 22, 2014

Resource

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome

Masayuki Sakurai
Hiroki Ueda
Takanori Yano
Shunpei Okada
Hideki Terajima
Toutai Mitsuyama
... [+1 authors] ...,
Atsushi Toyoda
Asao Fujiyama
Hitomi Kawabata
Tsutomu Suzuki

First Published January 9, 2014

Resource

Coelacanth genomes reveal signatures for evolutionary transition from water to land

Masato Nikaido
Hideki Noguchi
Hidenori Nishihara
Atsushi Toyoda
Yutaka Suzuki
Rei Kajitani Hikoyu Suzuki Miki Okuno Mitsuto Aibara Benjamin P. Ngatunga Semvua I. Mzighani Hassan W.J. Kalombo Kawilarang W.A. Masengi Josef Tuda Sadao Nogami Ryuichiro Maeda Masamitsu Iwata Yoshitaka Abe Koji Fujimura Masataka Okabe Takanori Amano Akiteru Maeno Toshihiko Shiroishi Takehiko Itoh
... [+19 authors] ...,
Sumio Sugano
Yuji Kohara
Asao Fujiyama
Norihiro Okada

First Published July 22, 2013

Resource

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

Toyoyuki Takada
Toshinobu Ebata
Hideki Noguchi
Thomas M. Keane
David J. Adams
Takanori Narita Tadasu Shin-I Hironori Fujisawa Atsushi Toyoda Kuniya Abe Yuichi Obata Yoshiyuki Sakaki
... [+7 authors] ...,
Kazuo Moriwaki
Asao Fujiyama
Yuji Kohara
Toshihiko Shiroishi

First Published April 19, 2013

Resource

Copy number variation of individual cattle genomes using next-generation sequencing

Derek M. Bickhart
Yali Hou
Steven G. Schroeder
Can Alkan
Maria Francesca Cardone
Lakshmi K. Matukumalli Jiuzhou Song Robert D. Schnabel Mario Ventura Jeremy F. Taylor Jose Fernando Garcia
... [+6 authors] ...,
Curtis P. Van Tassell
Tad S. Sonstegard
Evan E. Eichler
George E. Liu

First Published February 2, 2012

Resource

Analysis of copy number variations among diverse cattle breeds

George E. Liu
Yali Hou
Bin Zhu
Maria Francesca Cardone
Lu Jiang
Angelo Cellamare Apratim Mitra Leeson J. Alexander Luiz L. Coutinho Maria Elena Dell'Aquila Lou C. Gasbarre Gianni Lacalandra Robert W. Li Lakshmi K. Matukumalli Dan Nonneman Luciana C. de A. Regitano Tim P.L. Smith Jiuzhou Song Tad S. Sonstegard Curt P. Van Tassell
... [+15 authors] ...,
Mario Ventura
Evan E. Eichler
Tara G. McDaneld
John W. Keele

First Published March 8, 2010