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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

Rei Kajitani
Kouta Toshimoto
Hideki Noguchi
Atsushi Toyoda
Yoshitoshi Ogura
Miki Okuno Mitsuru Yabana Masayuki Harada Eiji Nagayasu Haruhiko Maruyama
... [+5 authors] ...,
Yuji Kohara
Asao Fujiyama
Tetsuya Hayashi
Takehiko Itoh

First Published April 22, 2014

Resource

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome

Masayuki Sakurai
Hiroki Ueda
Takanori Yano
Shunpei Okada
Hideki Terajima
Toutai Mitsuyama
... [+1 authors] ...,
Atsushi Toyoda
Asao Fujiyama
Hitomi Kawabata
Tsutomu Suzuki

First Published January 9, 2014

Resource

Coelacanth genomes reveal signatures for evolutionary transition from water to land

Masato Nikaido
Hideki Noguchi
Hidenori Nishihara
Atsushi Toyoda
Yutaka Suzuki
Rei Kajitani Hikoyu Suzuki Miki Okuno Mitsuto Aibara Benjamin P. Ngatunga Semvua I. Mzighani Hassan W.J. Kalombo Kawilarang W.A. Masengi Josef Tuda Sadao Nogami Ryuichiro Maeda Masamitsu Iwata Yoshitaka Abe Koji Fujimura Masataka Okabe Takanori Amano Akiteru Maeno Toshihiko Shiroishi Takehiko Itoh
... [+19 authors] ...,
Sumio Sugano
Yuji Kohara
Asao Fujiyama
Norihiro Okada

First Published July 22, 2013

Resource

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

Toyoyuki Takada
Toshinobu Ebata
Hideki Noguchi
Thomas M. Keane
David J. Adams
Takanori Narita Tadasu Shin-I Hironori Fujisawa Atsushi Toyoda Kuniya Abe Yuichi Obata Yoshiyuki Sakaki
... [+7 authors] ...,
Kazuo Moriwaki
Asao Fujiyama
Yuji Kohara
Toshihiko Shiroishi

First Published April 19, 2013

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Resource

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Lingyun Song
Zhancheng Zhang
Linda L. Grasfeder
Alan P. Boyle
Paul G. Giresi
Bum-Kyu Lee Nathan C. Sheffield Stefan Gräf Mikael Huss Damian Keefe Zheng Liu Darin London Ryan M. McDaniell Yoichiro Shibata Kimberly A. Showers Jeremy M. Simon Teresa Vales Tianyuan Wang Deborah Winter Zhuzhu Zhang Neil D. Clarke Ewan Birney
... [+17 authors] ...,
Vishwanath R. Iyer
Gregory E. Crawford
Jason D. Lieb
Terrence S. Furey

First Published July 12, 2011