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Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser

  • Jiawei Shen
  • Siyuan Cheng
  • Deepak Purushotham
  • Xiaoyu Zhuo
  • Alan Y Du
  • Wenjin Zhang
  • Daofeng Li
  • Ting Wang
  • First Published February 21, 2025
Resource

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser

  • Xiaoyu Zhuo
  • Silas Hsu
  • Deepak Purushotham
  • Prashant Kumar Kuntala
  • Jessica K. Harrison
  • Alan Y. Du
  • Samuel Chen
  • Daofeng Li
  • Ting Wang
  • First Published May 8, 2023
Resource

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

  • Bérénice A. Benayoun
  • Elizabeth A. Pollina
  • Param Priya Singh
  • Salah Mahmoudi
  • Itamar Harel
  • Kerriann M. Casey
  • Ben W. Dulken
  • Anshul Kundaje
  • Anne Brunet
  • First Published March 11, 2019
Resource

Impact of regulatory variation across human iPSCs and differentiated cells

  • Nicholas E. Banovich
  • Yang I. Li
  • Anil Raj
  • Michelle C. Ward
  • Peyton Greenside
  • Diego Calderon Po Yuan Tung Jonathan E. Burnett Marsha Myrthil Samantha M. Thomas Courtney K. Burrows Irene Gallego Romero
  • ... [+7 authors] ...,
  • Bryan J. Pavlovic
  • Anshul Kundaje
  • Jonathan K. Pritchard
  • Yoav Gilad
  • First Published December 5, 2017
Resource

C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

  • Aaron C. Daugherty
  • Robin W. Yeo
  • Jason D. Buenrostro
  • William J. Greenleaf
  • Anshul Kundaje
  • Anne Brunet
  • First Published November 15, 2017
Resource

Drosophila melanogaster" > Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

  • Matthew Slattery
  • Lijia Ma
  • Rebecca F. Spokony
  • Robert K. Arthur
  • Pouya Kheradpour
  • Anshul Kundaje Nicolas Nègre Alex Crofts Ryan Ptashkin Jennifer Zieba Alexander Ostapenko Sarah Suchy Alec Victorsen Nader Jameel A. Jason Grundstad Wenxuan Gao Jennifer R. Moran
  • ... [+12 authors] ...,
  • E. Jay Rehm
  • Robert L. Grossman
  • Manolis Kellis
  • Kevin P. White
  • First Published July 1, 2014
Resource

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

  • Jie Wang
  • Jiali Zhuang
  • Sowmya Iyer
  • XinYing Lin
  • Troy W. Whitfield
  • Melissa C. Greven Brian G. Pierce Xianjun Dong Anshul Kundaje Yong Cheng Oliver J. Rando Ewan Birney
  • ... [+7 authors] ...,
  • Richard M. Myers
  • William S. Noble
  • Michael Snyder
  • Zhiping Weng
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
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