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Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

  • Bérénice A. Benayoun
  • Elizabeth A. Pollina
  • Param Priya Singh
  • Salah Mahmoudi
  • Itamar Harel
  • Kerriann M. Casey
  • Ben W. Dulken
  • Anshul Kundaje
  • Anne Brunet
  • First Published March 11, 2019
Resource

C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

  • Aaron C. Daugherty
  • Robin W. Yeo
  • Jason D. Buenrostro
  • William J. Greenleaf
  • Anshul Kundaje
  • Anne Brunet
  • First Published November 15, 2017
Resource

GENCODE: The reference human genome annotation for The ENCODE Project

  • Jennifer Harrow
  • Adam Frankish
  • Jose M. Gonzalez
  • Electra Tapanari
  • Mark Diekhans
  • Felix Kokocinski Bronwen L. Aken Daniel Barrell Amonida Zadissa Stephen Searle If Barnes Alexandra Bignell Veronika Boychenko Toby Hunt Mike Kay Gaurab Mukherjee Jeena Rajan Gloria Despacio-Reyes Gary Saunders Charles Steward Rachel Harte Michael Lin Cédric Howald Andrea Tanzer Thomas Derrien Jacqueline Chrast Nathalie Walters Suganthi Balasubramanian Baikang Pei Michael Tress Jose Manuel Rodriguez Iakes Ezkurdia Jeltje van Baren Michael Brent David Haussler Manolis Kellis Alfonso Valencia
  • ... [+32 authors] ...,
  • Alexandre Reymond
  • Mark Gerstein
  • Roderic Guigó
  • Tim J. Hubbard
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Resource

MicroRNA programs in normal and aberrant stem and progenitor cells

  • Christopher P. Arnold
  • Ruoying Tan
  • Baiyu Zhou
  • Si-Biao Yue
  • Steven Schaffert
  • Joseph R. Biggs Regis Doyonnas Miao-Chia Lo John M. Perry Valérie M. Renault Alessandra Sacco Tim Somervaille Patrick Viatour Anne Brunet Michael L. Cleary Linheng Li Julien Sage
  • ... [+12 authors] ...,
  • Dong-Er Zhang
  • Helen M. Blau
  • Caifu Chen
  • Chang-Zheng Chen
  • First Published March 30, 2011
Resource

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

  • Alexej Abyzov
  • Alexander E. Urban
  • Michael Snyder
  • Mark Gerstein
  • First Published February 7, 2011
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