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A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples

Shuai Guo
Xiaoqian Liu
Xuesen Cheng
Yujie Jiang
Shuangxi Ji
Qingnan Liang Andrew Koval Yumei Li Leah A. Owen Ivana K. Kim Ana Aparicio Sanghoon Lee Anil K. Sood Scott Kopetz John Paul Shen
... [+10 authors] ...,
John N. Weinstein
Margaret M. DeAngelis
Rui Chen
Wenyi Wang

First Published November 25, 2024

Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples

Shuangxi Ji
Tong Zhu
Ankit Sethia
Wenyi Wang

First Published April 8, 2024

Enhancers with tissue-specific activity are enriched in intronic regions

Beatrice Borsari
Pablo Villegas-Mirón
Sílvia Pérez-Lluch
Isabel Turpin
Hafid Laayouni
Alba Segarra-Casas
Jaume Bertranpetit
Roderic Guigó
Sandra Acosta

First Published July 21, 2021

A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome

Fan Gao
Xuedong Pan
Elissa B. Dodd-Eaton
Carlos Vera Recio
Matthew D. Montierth
Jasmina Bojadzieva Phuong L. Mai Kristin Zelley Valen E. Johnson Danielle Braun Kim E. Nichols
... [+6 authors] ...,
Judy E. Garber
Sharon A. Savage
Louise C. Strong
Wenyi Wang

First Published August 18, 2020

A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping

Jordan A. Ramilowski
Chi Wai Yip
Saumya Agrawal
Jen-Chien Chang
Yari Ciani
Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
... [+107 authors] ...,
Ken Yagi
Michiel J.L. de Hoon
Jay W. Shin
Piero Carninci

First Published July 27, 2020

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration

Elena Vizcaya-Molina
Cecilia C. Klein
Florenci Serras
Rakesh K. Mishra
Roderic Guigó
Montserrat Corominas

First Published November 20, 2018

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

Marco Mariotti
Didac Santesmasses
Salvador Capella-Gutierrez
Andrea Mateo
Carme Arnan
Rory Johnson Salvatore D'Aniello Sun Hee Yim Vadim N. Gladyshev
... [+4 authors] ...,
Florenci Serras
Montserrat Corominas
Toni Gabaldón
Roderic Guigó

First Published July 20, 2015

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

Pedro G. Ferreira
Pedro Jares
Daniel Rico
Gonzalo Gómez-López
Alejandra Martínez-Trillos
Neus Villamor Simone Ecker Abel González-Pérez David G. Knowles Jean Monlong Rory Johnson Victor Quesada Sarah Djebali Panagiotis Papasaikas Mónica López-Guerra Dolors Colomer Cristina Royo Maite Cazorla Magda Pinyol Guillem Clot Marta Aymerich Maria Rozman Marta Kulis David Tamborero Anaïs Gouin Julie Blanc Marta Gut Ivo Gut Xose S. Puente David G. Pisano José Ignacio Martin-Subero Nuria López-Bigas Armando López-Guillermo
... [+28 authors] ...,
Alfonso Valencia
Carlos López-Otín
Elías Campo
Roderic Guigó

First Published November 21, 2013

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Your search for returned 22 results

A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples

Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples

Enhancers with tissue-specific activity are enriched in intronic regions

A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome

A limited set of transcriptional programs define major cell types

Functional annotation of human long noncoding RNAs via molecular phenotyping

Dynamics of microRNA expression during mouse prenatal development

Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

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