Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
- First Published May 28, 2019
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
- First Published February 10, 2014
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
- First Published September 10, 2012
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Genome-wide identification of conserved regulatory function in diverged sequences
- First Published May 31, 2011
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
- First Published December 8, 2004
Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat
- First Published April 1, 2004