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Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

  • Kaixuan Luo
  • Jianling Zhong
  • Alexias Safi
  • Linda K. Hong
  • Alok K. Tewari
  • Lingyun Song
  • ... [+1 authors] ...,
  • Timothy E. Reddy
  • Li Ma
  • Gregory E. Crawford
  • Alexander J. Hartemink
  • First Published May 24, 2022

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

  • Ian C. McDowell
  • Alejandro Barrera
  • Anthony M. D'Ippolito
  • Christopher M. Vockley
  • Linda K. Hong
  • Sarah M. Leichter Luke C. Bartelt William H. Majoros Lingyun Song Alexias Safi D. Dewran Koçak Charles A. Gersbach
  • ... [+7 authors] ...,
  • Alexander J. Hartemink
  • Gregory E. Crawford
  • Barbara E. Engelhardt
  • Timothy E. Reddy
  • First Published August 10, 2018

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

  • James M. Davison
  • Colin R. Lickwar
  • Lingyun Song
  • Ghislain Breton
  • Gregory E. Crawford
  • John F. Rawls
  • First Published April 6, 2017

Daphnia pulex" > High mutational rates of large-scale duplication and deletion in Daphnia pulex

  • Nathan Keith
  • Abraham E. Tucker
  • Craig E. Jackson
  • Way Sung
  • José Ignacio Lucas Lledó
  • Daniel R. Schrider Sarah Schaack Jeffry L. Dudycha
  • ... [+3 authors] ...,
  • Matthew Ackerman
  • Andrew J. Younge
  • Joseph R. Shaw
  • Michael Lynch
  • First Published October 30, 2015

Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

  • Lauren R. Polstein
  • Pablo Perez-Pinera
  • D. Dewran Kocak
  • Christopher M. Vockley
  • Peggy Bledsoe
  • Lingyun Song
  • ... [+1 authors] ...,
  • Alexias Safi
  • Gregory E. Crawford
  • Timothy E. Reddy
  • Charles A. Gersbach
  • First Published May 29, 2015

Differential retention and divergent resolution of duplicate genes following whole-genome duplication

  • Casey L. McGrath
  • Jean-Francois Gout
  • Parul Johri
  • Thomas G. Doak
  • Michael Lynch
  • First Published August 1, 2014

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

  • Deborah R. Winter
  • Lingyun Song
  • Sayan Mukherjee
  • Terrence S. Furey
  • Gregory E. Crawford
  • First Published May 8, 2013

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity

  • Bing Zhang
  • Daniel S. Day
  • Joshua W. Ho
  • Lingyun Song
  • Jingjing Cao
  • Danos Christodoulou
  • ... [+1 authors] ...,
  • Jonathan G. Seidman
  • Gregory E. Crawford
  • Peter J. Park
  • William T. Pu
  • First Published April 1, 2013

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

  • Nathan C. Sheffield
  • Robert E. Thurman
  • Lingyun Song
  • Alexias Safi
  • John A. Stamatoyannopoulos
  • Boris Lenhard
  • Gregory E. Crawford
  • Terrence S. Furey
  • First Published March 12, 2013
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