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Functional annotation of human long noncoding RNAs via molecular phenotyping

Jordan A. Ramilowski
Chi Wai Yip
Saumya Agrawal
Jen-Chien Chang
Yari Ciani
Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
... [+107 authors] ...,
Ken Yagi
Michiel J.L. de Hoon
Jay W. Shin
Piero Carninci

First Published July 27, 2020

Research

cis-regulatory nodes active during the vertebrate phylotypic period" > Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period

Juan J. Tena
Cristina González-Aguilera
Ana Fernández-Miñán
Javier Vázquez-Marín
Helena Parra-Acero
Joe W. Cross Peter W.J. Rigby
... [+2 authors] ...,
Jaime J. Carvajal
Joachim Wittbrodt
José L. Gómez-Skarmeta
Juan R. Martínez-Morales

First Published April 7, 2014

Research

Meis1 alters enhancer function in the developing telencephalon" > Restless Legs Syndrome-associated intronic common variant in Meis1 alters enhancer function in the developing telencephalon

Derek Spieler
Maria Kaffe
Franziska Knauf
José Bessa
Juan J. Tena
Florian Giesert Barbara Schormair Erik Tilch Heekyoung Lee Marion Horsch Darina Czamara Nazanin Karbalai Christine von Toerne Melanie Waldenberger Christian Gieger Peter Lichtner Melina Claussnitzer Ronald Naumann Bertram Müller-Myhsok Miguel Torres Lillian Garrett Jan Rozman Martin Klingenspor Valérie Gailus-Durner Helmut Fuchs Martin Hrabě de Angelis Johannes Beckers Sabine M. Hölter Thomas Meitinger Stefanie M. Hauck Helmut Laumen
... [+26 authors] ...,
Wolfgang Wurst
Fernando Casares
Jose Luis Gómez-Skarmeta
Juliane Winkelmann

First Published March 18, 2014

Research

cis-regulatory constraints" > Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

Manuel Irimia
Juan J. Tena
Maria S. Alexis
Ana Fernandez-Miñan
Ignacio Maeso
Ozren Bogdanović
... [+1 authors] ...,
Elisa de la Calle-Mustienes
Scott W. Roy
José L. Gómez-Skarmeta
Hunter B. Fraser

First Published June 21, 2012

Resource

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

Ozren Bogdanović
Ana Fernandez-Miñán
Juan J. Tena
Elisa de la Calle-Mustienes
Carmen Hidalgo
Ila van Kruysbergen
Simon J. van Heeringen
Gert Jan C. Veenstra
José Luis Gómez-Skarmeta

First Published May 16, 2012

Research

An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

Ignacio Maeso
Manuel Irimia
Juan J. Tena
Esther González-Pérez
David Tran
Vydianathan Ravi
... [+1 authors] ...,
Byrappa Venkatesh
Sonsoles Campuzano
José Luis Gómez-Skarmeta
Jordi Garcia-Fernàndez

First Published January 10, 2012

Methods

Human Disease Genes and Their Cloned Mouse Orthologs: Exploration of the FANTOM2 cDNA Sequence Data Set

Lynn M. Schriml
David P. Hill
Judith A. Blake
Hidemasa Bono
Anthony Wynshaw-Boris
William J. Pavan
... [+1 authors] ...,
Brian Z. Ring
Kirk Beisel
Mitsutoshi Setou
Yasushi Okazaki

First Published June 2, 2003

ARTICLE

Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia

Piero Carninci
Kazunori Waki
Toshiyuki Shiraki
Hideaki Konno
Kazuhiro Shibata
Masayoshi Itoh Katsunori Aizawa Takahiro Arakawa Yoshiyuki Ishii Daisuke Sasaki Hidemasa Bono Shinji Kondo Yuichi Sugahara Rintaro Saito Naoki Osato Shiro Fukuda Kenjiro Sato Akira Watahiki Tomoko Hirozane-Kishikawa Mari Nakamura Yuko Shibata Ayako Yasunishi Noriko Kikuchi Atsushi Yoshiki Moriaki Kusakabe Stefano Gustincich Kirk Beisel William Pavan Vassilis Aidinis Akira Nakagawara William A. Held Hiroo Iwata Tomohiro Kono Hiromitsu Nakauchi Paul Lyons Christine Wells David A. Hume Michela Fagiolini Takao K. Hensch Michelle Brinkmeier Sally Camper Junji Hirota Peter Mombaerts
... [+38 authors] ...,
Masami Muramatsu
Yasushi Okazaki
Jun Kawai
Yoshihide Hayashizaki

First Published June 2, 2003

RESOURCE

Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data

Hiromi Kochiwa
Ryosuke Suzuki
Takanori Washio
Rintaro Saito
The RIKEN Genome Exploration Research Group Phase
Hidemasa Bono Piero Carninci
... [+2 authors] ...,
Yasushi Okazaki
Rika Miki
Yoshihide Hayashizaki
Masaru Tomita

First Published July 19, 2002

METHODS

Protein–Protein Interaction Panel Using Mouse Full-Length cDNAs

Harukazu Suzuki
Yoshifumi Fukunishi
Ikuko Kagawa
Rintaro Saito
Hiroshi Oda
Toshinori Endo
... [+1 authors] ...,
Shinji Kondo
Hidemasa Bono
Yasushi Okazaki
Yoshihide Hayashizaki

First Published September 20, 2001

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Your search for returned 11 results

Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

Research

cis-regulatory nodes active during the vertebrate phylotypic period" > Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period

Research

Meis1 alters enhancer function in the developing telencephalon" > Restless Legs Syndrome-associated intronic common variant in Meis1 alters enhancer function in the developing telencephalon

Research

cis-regulatory constraints" > Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

Resource

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

Research

An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

Methods

Human Disease Genes and Their Cloned Mouse Orthologs: Exploration of the FANTOM2 cDNA Sequence Data Set

ARTICLE

Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia

RESOURCE

Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data

METHODS

Protein–Protein Interaction Panel Using Mouse Full-Length cDNAs

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