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Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements

  • Hosiana Abewe
  • Alexandra Richey
  • Jeffery M. Vahrenkamp
  • Matthew Ginley-Hidinger
  • Craig M. Rush
  • Noel Kitchen
  • Xiaoyang Zhang
  • Jason Gertz
  • First Published March 3, 2025

A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements

  • Salam Idriss
  • Mohammad Hallal
  • Abdullah El-Kurdi
  • Hasan Zalzali
  • Inaam El-Rassi
  • Erik A. Ehli Christel M. Davis Philip E.D. Chung
  • ... [+3 authors] ...,
  • Deena M.A. Gendoo
  • Eldad Zacksenhaus
  • Raya Saab
  • Pierre Khoueiry
  • First Published January 17, 2023

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

  • Jialin Liu
  • Rebecca R. Viales
  • Pierre Khoueiry
  • James P. Reddington
  • Charles Girardot
  • Eileen E.M. Furlong
  • Marc Robinson-Rechavi
  • First Published July 15, 2021

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples

  • Jeffery M. Vahrenkamp
  • Kathryn Szczotka
  • Mark K. Dodson
  • Elke A. Jarboe
  • Andrew P. Soisson
  • Jason Gertz
  • First Published October 24, 2019

Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer

  • Zannel Blanchard
  • Jeffery M. Vahrenkamp
  • Kristofer C. Berrett
  • Spencer Arnesen
  • Jason Gertz
  • First Published July 30, 2019

Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites

  • Daniel Savic
  • Brian S. Roberts
  • Julia B. Carleton
  • E. Christopher Partridge
  • Michael A. White
  • Barak A. Cohen
  • Gregory M. Cooper
  • Jason Gertz
  • Richard M. Myers
  • First Published October 20, 2015

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

  • Georgi K. Marinov
  • Brian A. Williams
  • Ken McCue
  • Gary P. Schroth
  • Jason Gertz
  • Richard M. Myers
  • Barbara J. Wold
  • First Published December 3, 2013

Dynamic DNA methylation across diverse human cell lines and tissues

  • Katherine E. Varley
  • Jason Gertz
  • Kevin M. Bowling
  • Stephanie L. Parker
  • Timothy E. Reddy
  • Florencia Pauli-Behn Marie K. Cross Brian A. Williams John A. Stamatoyannopoulos
  • ... [+4 authors] ...,
  • Gregory E. Crawford
  • Devin M. Absher
  • Barbara J. Wold
  • Richard M. Myers
  • First Published January 16, 2013

Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner

  • Jason Gertz
  • Timothy E. Reddy
  • Katherine E. Varley
  • Michael J. Garabedian
  • Richard M. Myers
  • First Published September 26, 2012

Widespread plasticity in CTCF occupancy linked to DNA methylation

  • Hao Wang
  • Matthew T. Maurano
  • Hongzhu Qu
  • Katherine E. Varley
  • Jason Gertz
  • Florencia Pauli Kristen Lee Theresa Canfield Molly Weaver Richard Sandstrom
  • ... [+5 authors] ...,
  • Robert E. Thurman
  • Rajinder Kaul
  • Richard M. Myers
  • John A. Stamatoyannopoulos
  • First Published September 5, 2012
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