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Research

Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts

  • Yanis Zekri
  • Sebastian Gregoricchio
  • Elif Yapıcı
  • Chia-Chi Flora Huang
  • Tunç Morova
  • Umut Berkay Altıntaş
  • Gozde Korkmaz
  • Nathan A. Lack
  • Wilbert Zwart
  • First Published June 10, 2025
Research

Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions

  • Stacey E.P. Joosten
  • Sebastian Gregoricchio
  • Suzan Stelloo
  • Elif Yapıcı
  • Chia-Chi Flora Huang
  • Kerim Yavuz Maria Donaldson Collier Tunç Morova Umut Berkay Altintaş Yongsoo Kim Sander Canisius Cathy B. Moelans Paul J. van Diest Gozde Korkmaz
  • ... [+9 authors] ...,
  • Nathan A. Lack
  • Michiel Vermeulen
  • Sabine C. Linn
  • Wilbert Zwart
  • First Published May 6, 2024
Research

XIST locus" > Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

  • Julie E. Horvath
  • Christina B. Sheedy
  • Stephanie L. Merrett
  • Abdoulaye Banire Diallo
  • David L. Swofford
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Huntington F. Willard
  • First Published April 25, 2011
Method

Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing

  • Jamie K. Teer
  • Lori L. Bonnycastle
  • Peter S. Chines
  • Nancy F. Hansen
  • Natsuyo Aoyama
  • Amy J. Swift Hatice Ozel Abaan Thomas J. Albert Elliott H. Margulies
  • ... [+4 authors] ...,
  • Eric D. Green
  • Francis S. Collins
  • James C. Mullikin
  • Leslie G. Biesecker
  • First Published September 1, 2010
Resource

The completion of the Mammalian Gene Collection (MGC)

  • Gary Temple
  • Daniela S. Gerhard
  • Rebekah Rasooly
  • Elise A. Feingold
  • Peter J. Good
  • Cristen Robinson Allison Mandich Jeffrey G. Derge Jeanne Lewis Debonny Shoaf Francis S. Collins Wonhee Jang Lukas Wagner Carolyn M. Shenmen Leonie Misquitta Carl F. Schaefer Kenneth H. Buetow Tom I. Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L. Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D. Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L.G. Comstock Michael Stevens Chaochun Wei Marijke J. van Baren Kourosh Salehi-Ashtiani Ryan R. Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E. Gruber Mark R. Smith John McPherson Angela M. Garcia Preethi H. Gunaratne Jiaqian Wu Donna Muzny Richard A. Gibbs Alice C. Young Gerard G. Bouffard Robert W. Blakesley Jim Mullikin Eric D. Green Mark C. Dickson Alex C. Rodriguez Jane Grimwood Jeremy Schmutz Richard M. Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A. Moore Michael Mayo Sarah Munro Susan Wagner Steven J.M. Jones Robert A. Holt Marco A. Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C. Pulido Keith Robison Dominic Esposito James Hartley
  • ... [+118 authors] ...,
  • Vanessa E. Wall
  • Ralph F. Hopkins
  • Osamu Ohara
  • Stefan Wiemann
  • First Published September 18, 2009
Resource

The ClinSeq Project: Piloting large-scale genome sequencing for research in genomic medicine

  • Leslie G. Biesecker
  • James C. Mullikin
  • Flavia M. Facio
  • Clesson Turner
  • Praveen F. Cherukuri
  • Robert W. Blakesley Gerard G. Bouffard Peter S. Chines Pedro Cruz Nancy F. Hansen Jamie K. Teer Baishali Maskeri Alice C. Young Teri A. Manolio Alexander F. Wilson Toren Finkel Paul Hwang Andrew Arai Alan T. Remaley
  • ... [+14 authors] ...,
  • Vandana Sachdev
  • Robert Shamburek
  • Richard O. Cannon
  • Eric D. Green
  • First Published July 14, 2009
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • Elliott H. Margulies
  • Gregory M. Cooper
  • George Asimenos
  • Daryl J. Thomas
  • Colin N. Dewey
  • Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
  • ... [+68 authors] ...,
  • Webb Miller
  • Lior Pachter
  • Eric D. Green
  • Arend Sidow
  • First Published June 13, 2007
ARTICLE

Distribution and intensity of constraint in mammalian genomic sequence

  • Gregory M. Cooper
  • Eric A. Stone
  • George Asimenos
  • Eric D. Green
  • Serafim Batzoglou
  • Arend Sidow
  • First Published June 17, 2005
ARTICLE

Identification and Characterization of Multi-Species Conserved Sequences

  • Elliott H. Margulies
  • Mathieu Blanchette
  • David Haussler
  • Eric D. Green
  • First Published December 1, 2003
METHODS

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

  • Michael Brudno
  • Chuong B. Do
  • Gregory M. Cooper
  • Michael F. Kim
  • Eugene Davydov
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Arend Sidow
  • Serafim Batzoglou
  • First Published March 12, 2003
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