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Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

  • Sumantra Chatterjee
  • Kameko M. Karasaki
  • Lauren E. Fries
  • Ashish Kapoor
  • Aravinda Chakravarti
  • First Published November 15, 2021
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Research

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

  • Stefan Washietl
  • Manolis Kellis
  • Manuel Garber
  • First Published January 15, 2014
Method

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

  • Michael F. Lin
  • Pouya Kheradpour
  • Stefan Washietl
  • Brian J. Parker
  • Jakob S. Pedersen
  • Manolis Kellis
  • First Published October 12, 2011
Method

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

  • Brian J. Parker
  • Ida Moltke
  • Adam Roth
  • Stefan Washietl
  • Jiayu Wen
  • Manolis Kellis
  • Ronald Breaker
  • Jakob Skou Pedersen
  • First Published October 12, 2011
Insight/Outlook

Genomic contributions to Mendelian disease

  • Aravinda Chakravarti
  • First Published May 2, 2011
LETTER

Human embryonic stem cells have a unique epigenetic signature

  • Marina Bibikova
  • Eugene Chudin
  • Bonnie Wu
  • Lixin Zhou
  • Eliza Wickham Garcia
  • Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
  • ... [+18 authors] ...,
  • Mahendra Rao
  • David L. Barker
  • Jeanne F. Loring
  • Jian-Bing Fan
  • First Published August 9, 2006
Methods

On the probability that a novel variant is a disease-causing mutation

  • Adele A. Mitchell
  • Aravinda Chakravarti
  • David J. Cutler
  • First Published June 17, 2005
Methods

Haplotype and Missing Data Inference in Nuclear Families

  • Shin Lin
  • Aravinda Chakravarti
  • David J. Cutler
  • First Published July 15, 2004
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