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Research

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

Sumantra Chatterjee
Kameko M. Karasaki
Lauren E. Fries
Ashish Kapoor
Aravinda Chakravarti

First Published November 15, 2021

Method

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Method

The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing

Marcin Cieslik
Rashmi Chugh
Yi-Mi Wu
Ming Wu
Christine Brennan
Robert Lonigro Fengyun Su Rui Wang Javed Siddiqui Rohit Mehra
... [+5 authors] ...,
Xuhong Cao
David Lucas
Arul M. Chinnaiyan
Dan Robinson

First Published August 7, 2015

Resource

The landscape of antisense gene expression in human cancers

O. Alejandro Balbin
Rohit Malik
Saravana M. Dhanasekaran
John R. Prensner
Xuhong Cao
Yi-Mi Wu Dan Robinson Rui Wang
... [+3 authors] ...,
Guoan Chen
David G. Beer
Alexey I. Nesvizhskii
Arul M. Chinnaiyan

First Published June 10, 2015

Research

HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses

Rafael Contreras-Galindo
Mark H. Kaplan
Shirley He
Angie C. Contreras-Galindo
Marta J. Gonzalez-Hernandez
Ferdinand Kappes Derek Dube Susana M. Chan Dan Robinson Fan Meng Manhong Dai
... [+6 authors] ...,
Scott D. Gitlin
Arul M. Chinnaiyan
Gilbert S. Omenn
David M. Markovitz

First Published May 8, 2013

Insight/Outlook

Genomic contributions to Mendelian disease

Aravinda Chakravarti

First Published May 2, 2011

LETTER

Human embryonic stem cells have a unique epigenetic signature

Marina Bibikova
Eugene Chudin
Bonnie Wu
Lixin Zhou
Eliza Wickham Garcia
Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
... [+18 authors] ...,
Mahendra Rao
David L. Barker
Jeanne F. Loring
Jian-Bing Fan

First Published August 9, 2006

Methods

On the probability that a novel variant is a disease-causing mutation

Adele A. Mitchell
Aravinda Chakravarti
David J. Cutler

First Published June 17, 2005

Methods

Haplotype and Missing Data Inference in Nuclear Families

Shin Lin
Aravinda Chakravarti
David J. Cutler

First Published July 15, 2004

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