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Bacteriovorax bacteria" > The chromatin landscape of the histone-possessing Bacteriovorax bacteria

Georgi K. Marinov
Benjamin Doughty
Anshul Kundaje
William J. Greenleaf

First Published November 21, 2024

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Kelly Cochran
Divyanshi Srivastava
Avanti Shrikumar
Akshay Balsubramani
Ross C. Hardison
Anshul Kundaje
Shaun Mahony

First Published January 18, 2022

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

Bérénice A. Benayoun
Elizabeth A. Pollina
Param Priya Singh
Salah Mahmoudi
Itamar Harel
Kerriann M. Casey
Ben W. Dulken
Anshul Kundaje
Anne Brunet

First Published March 11, 2019

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Amit Blumberg
Charles G. Danko
Anshul Kundaje
Dan Mishmar

First Published July 12, 2018

Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures

Federico Comoglio
Hyun Jung Park
Stefan Schoenfelder
Iros Barozzi
Daniel Bode
Peter Fraser
Anthony R. Green

First Published February 2, 2018

Impact of regulatory variation across human iPSCs and differentiated cells

Nicholas E. Banovich
Yang I. Li
Anil Raj
Michelle C. Ward
Peyton Greenside
Diego Calderon Po Yuan Tung Jonathan E. Burnett Marsha Myrthil Samantha M. Thomas Courtney K. Burrows Irene Gallego Romero
... [+7 authors] ...,
Bryan J. Pavlovic
Anshul Kundaje
Jonathan K. Pritchard
Yoav Gilad

First Published December 5, 2017

C. elegans" > Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

Aaron C. Daugherty
Robin W. Yeo
Jason D. Buenrostro
William J. Greenleaf
Anshul Kundaje
Anne Brunet

First Published November 15, 2017

Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes

Yinxiu Zhan
Luca Mariani
Iros Barozzi
Edda G. Schulz
Nils Blüthgen
Michael Stadler
Guido Tiana
Luca Giorgetti

First Published January 5, 2017

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Amit Blumberg
Edward J. Rice
Anshul Kundaje
Charles G. Danko
Dan Mishmar

First Published January 3, 2017

Impact of the X Chromosome and sex on regulatory variation

Kimberly R. Kukurba
Princy Parsana
Brunilda Balliu
Kevin S. Smith
Zachary Zappala
David A. Knowles Marie-Julie Favé Joe R. Davis Xin Li Xiaowei Zhu James B. Potash Myrna M. Weissman Jianxin Shi Anshul Kundaje Douglas F. Levinson
... [+10 authors] ...,
Philip Awadalla
Sara Mostafavi
Alexis Battle
Stephen B. Montgomery

First Published April 21, 2016

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