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Research

Embryonic LTR retrotransposons supply promoter modules to somatic tissues

Kosuke Hashimoto
Eeva-Mari Jouhilahti
Virpi Töhönen
Piero Carninci
Juha Kere
Shintaro Katayama

First Published October 21, 2021

Research

Antisense RNAs during early vertebrate development are divided in groups with distinct features

Sanjana Pillay
Hazuki Takahashi
Piero Carninci
Aditi Kanhere

First Published April 1, 2021

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

Impact of the X Chromosome and sex on regulatory variation

Kimberly R. Kukurba
Princy Parsana
Brunilda Balliu
Kevin S. Smith
Zachary Zappala
David A. Knowles Marie-Julie Favé Joe R. Davis Xin Li Xiaowei Zhu James B. Potash Myrna M. Weissman Jianxin Shi Anshul Kundaje Douglas F. Levinson
... [+10 authors] ...,
Philip Awadalla
Sara Mostafavi
Alexis Battle
Stephen B. Montgomery

First Published April 21, 2016

Research

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Kosuke Hashimoto
Ana Maria Suzuki
Alexandre Dos Santos
Christophe Desterke
Agnese Collino
Serena Ghisletti Emilie Braun Alessandro Bonetti Alexandre Fort Xian-Yang Qin Enrico Radaelli Bogumil Kaczkowski Alistair R.R. Forrest Soichi Kojima Didier Samuel
... [+10 authors] ...,
Gioacchino Natoli
Marie Annick Buendia
Jamila Faivre
Piero Carninci

First Published October 28, 2015

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Research

The landscape of genomic imprinting across diverse adult human tissues

Yael Baran
Meena Subramaniam
Anne Biton
Taru Tukiainen
Emily K. Tsang
Manuel A. Rivas Matti Pirinen Maria Gutierrez-Arcelus Kevin S. Smith Kim R. Kukurba Rui Zhang Celeste Eng Dara G. Torgerson Cydney Urbanek Jin Billy Li Jose R. Rodriguez-Santana Esteban G. Burchard Max A. Seibold
... [+13 authors] ...,
Daniel G. MacArthur
Stephen B. Montgomery
Noah A. Zaitlen
Tuuli Lappalainen

First Published May 7, 2015

Research

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Alexis Battle
Sara Mostafavi
Xiaowei Zhu
James B. Potash
Myrna M. Weissman
Courtney McCormick Christian D. Haudenschild Kenneth B. Beckman Jianxin Shi Rui Mei
... [+5 authors] ...,
Alexander E. Urban
Stephen B. Montgomery
Douglas F. Levinson
Daphne Koller

First Published October 3, 2013

Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

Stephen B. Montgomery
David L. Goode
Erika Kvikstad
Cornelis A. Albers
Zhengdong D. Zhang
Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
... [+12 authors] ...,
Kateryna D. Makova
Jonathan Marchini
Gil McVean
Gerton Lunter

First Published March 11, 2013

Research

Sex-biased genetic effects on gene regulation in humans

Antigone S. Dimas
Alexandra C. Nica
Stephen B. Montgomery
Barbara E. Stranger
Towfique Raj
Alfonso Buil Thomas Giger
... [+2 authors] ...,
Tuuli Lappalainen
Maria Gutierrez-Arcelus
Mark I. McCarthy
Emmanouil T. Dermitzakis

First Published September 7, 2012

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