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Research

Embryonic LTR retrotransposons supply promoter modules to somatic tissues

Kosuke Hashimoto
Eeva-Mari Jouhilahti
Virpi Töhönen
Piero Carninci
Juha Kere
Shintaro Katayama

First Published October 21, 2021

Research

Antisense RNAs during early vertebrate development are divided in groups with distinct features

Sanjana Pillay
Hazuki Takahashi
Piero Carninci
Aditi Kanhere

First Published April 1, 2021

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Kosuke Hashimoto
Ana Maria Suzuki
Alexandre Dos Santos
Christophe Desterke
Agnese Collino
Serena Ghisletti Emilie Braun Alessandro Bonetti Alexandre Fort Xian-Yang Qin Enrico Radaelli Bogumil Kaczkowski Alistair R.R. Forrest Soichi Kojima Didier Samuel
... [+10 authors] ...,
Gioacchino Natoli
Marie Annick Buendia
Jamila Faivre
Piero Carninci

First Published October 28, 2015

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

Research

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

Research

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer

Kim Jung H.
Dhanasekaran Saravana M.
Prensner John R.
Cao Xuhong
Robinson Daniel
Kalyana-Sundaram Shanker Huang Christina Shankar Sunita Jing Xiaojun Iyer Matthew Hu Ming Sam Lee Grasso Catherine Maher Christopher A. Palanisamy Nallasivam Mehra Rohit Kominsky Hal D.
... [+12 authors] ...,
Siddiqui Javed
Yu Jindan
Qin Zhaohui S.
Chinnaiyan Arul M.

First Published July 1, 2011

Research

Drosophila melanogaster" > Genome-wide analysis of promoter architecture in Drosophila melanogaster

Roger A. Hoskins
Jane M. Landolin
James B. Brown
Jeremy E. Sandler
Hazuki Takahashi
Timo Lassmann Charles Yu Benjamin W. Booth Dayu Zhang Kenneth H. Wan Li Yang Nathan Boley Justen Andrews Thomas C. Kaufman Brenton R. Graveley
... [+10 authors] ...,
Peter J. Bickel
Piero Carninci
Joseph W. Carlson
Susan E. Celniker

First Published December 22, 2010

Research

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Brad G. Hoffman
Gordon Robertson
Bogard Zavaglia
Mike Beach
Rebecca Cullum
Sam Lee Galina Soukhatcheva Leping Li Elizabeth D. Wederell Nina Thiessen Mikhail Bilenky Timothee Cezard Angela Tam Baljit Kamoh Inanc Birol Derek Dai YongJun Zhao Martin Hirst C. Bruce Verchere
... [+14 authors] ...,
Cheryl D. Helgason
Marco A. Marra
Steven J.M. Jones
Pamela A. Hoodless

First Published June 15, 2010

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