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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

C. elegans and humans" > Extreme HOT regions are CpG-dense promoters in C. elegans and humans

  • Ron A.-J. Chen
  • Przemyslaw Stempor
  • Thomas A. Down
  • Eva Zeiser
  • Sky K. Feuer
  • Julie Ahringer
  • First Published March 20, 2014
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • Stephen B. Montgomery
  • David L. Goode
  • Erika Kvikstad
  • Cornelis A. Albers
  • Zhengdong D. Zhang
  • Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
  • ... [+12 authors] ...,
  • Kateryna D. Makova
  • Jonathan Marchini
  • Gil McVean
  • Gerton Lunter
  • First Published March 11, 2013
Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • Chao Cheng
  • Roger Alexander
  • Renqiang Min
  • Jing Leng
  • Kevin Y. Yip
  • Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
  • ... [+10 authors] ...,
  • Ewan Birney
  • Zhiping Weng
  • Michael Snyder
  • Mark Gerstein
  • First Published September 5, 2012
Research

Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans

  • Huriya Beyan
  • Thomas A. Down
  • Sreeram V. Ramagopalan
  • Kristina Uvebrant
  • Anita Nilsson
  • Michelle L. Holland Carolina Gemma Gavin Giovannoni Bernhard O. Boehm George C. Ebers
  • ... [+5 authors] ...,
  • Åke Lernmark
  • Corrado M. Cilio
  • R. David Leslie
  • Vardhman K. Rakyan
  • First Published August 23, 2012
Research

A functional methylome map of ulcerative colitis

  • Robert Häsler
  • Zhe Feng
  • Liselotte Bäckdahl
  • Martina E. Spehlmann
  • Andre Franke
  • Andrew Teschendorff Vardhman K. Rakyan Thomas A. Down Gareth A. Wilson
  • ... [+4 authors] ...,
  • Andrew Feber
  • Stephan Beck
  • Stefan Schreiber
  • Philip Rosenstiel
  • First Published July 23, 2012
Research

Drosophila predicts DNA methylation and CpG landscapes in other invertebrates" > Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates

  • Lisa Nanty
  • Guillermo Carbajosa
  • Graham A. Heap
  • Francis Ratnieks
  • David A. van Heel
  • Thomas A. Down
  • Vardhman K. Rakyan
  • First Published September 22, 2011
Research

Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors

  • Andrew Feber
  • Gareth A. Wilson
  • Lu Zhang
  • Nadege Presneau
  • Bernadine Idowu
  • Thomas A. Down Vardhman K. Rakyan Luke A. Noon Alison C. Lloyd Elia Stupka Vassia Schiza
  • ... [+6 authors] ...,
  • Andrew E. Teschendorff
  • Gary P. Schroth
  • Adrienne Flanagan
  • Stephan Beck
  • First Published February 1, 2011
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