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Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

Vanessa L. Porter
Michelle Ng
Kieran O'Neill
Signe MacLennan
Richard D. Corbett
Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
... [+18 authors] ...,
Inanc Birol
Steven J.M. Jones
Janet S. Rader
Marco A. Marra

First Published December 5, 2024

Research

The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence

Xianglin Zhang
Xuehui Liu
Zhenhai Du
Lei Wei
Huan Fang
Qiongye Dong Jing Niu Yanda Li
... [+3 authors] ...,
Juntao Gao
Michael Q. Zhang
Wei Xie
Xiaowo Wang

First Published June 17, 2021

Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

Michael J. Johnston
Ana Nikolic
Nicoletta Ninkovic
Paul Guilhamon
Florence M.G. Cavalli
Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
... [+16 authors] ...,
Bradley St Croix
Douglas J. Mahoney
Mathieu Lupien
Marco Gallo

First Published June 27, 2019

Research

Global transcriptional activity dynamics reveal functional enhancer RNAs

Yoon Jung Kim
Peng Xie
Lian Cao
Michael Q. Zhang
Tae Hoon Kim

First Published October 23, 2018

Research

Genome-wide map of regulatory interactions in the human genome

Nastaran Heidari
Douglas H. Phanstiel
Chao He
Fabian Grubert
Fereshteh Jahanbani
Maya Kasowski
Michael Q. Zhang
Michael P. Snyder

First Published September 16, 2014

Research

Extensive relationship between antisense transcription and alternative splicing in the human genome

A. Sorana Morrissy
Malachi Griffith
Marco A. Marra

First Published June 30, 2011

Research

Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" > Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

Eugene Berezikov
Nicolas Robine
Anastasia Samsonova
Jakub O. Westholm
Ammar Naqvi
Jui-Hung Hung Katsutomo Okamura Qi Dai Diane Bortolamiol-Becet Raquel Martin Yongjun Zhao Phillip D. Zamore Gregory J. Hannon
... [+8 authors] ...,
Marco A. Marra
Zhiping Weng
Norbert Perrimon
Eric C. Lai

First Published December 22, 2010

Research

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Brad G. Hoffman
Gordon Robertson
Bogard Zavaglia
Mike Beach
Rebecca Cullum
Sam Lee Galina Soukhatcheva Leping Li Elizabeth D. Wederell Nina Thiessen Mikhail Bilenky Timothee Cezard Angela Tam Baljit Kamoh Inanc Birol Derek Dai YongJun Zhao Martin Hirst C. Bruce Verchere
... [+14 authors] ...,
Cheryl D. Helgason
Marco A. Marra
Steven J.M. Jones
Pamela A. Hoodless

First Published June 15, 2010