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Research

Gaps and complex structurally variant loci in phased genome assemblies

  • David Porubsky
  • Mitchell R. Vollger
  • William T. Harvey
  • Allison N. Rozanski
  • Peter Ebert
  • Glenn Hickey Patrick Hasenfeld Ashley D. Sanders Catherine Stober Jan O. Korbel Benedict Paten Tobias Marschall Evan E. Eichler Haley J. Abel Lucinda L. Antonacci-Fulton Mobin Asri Gunjan Baid Carl A. Baker Anastasiya Belyaeva Konstantinos Billis Guillaume Bourque Silvia Buonaiuto Andrew Carroll Mark J.P. Chaisson Pi-Chuan Chang Xian H. Chang Haoyu Cheng Justin Chu Sarah Cody Vincenza Colonna Daniel E. Cook Robert M. Cook-Deegan Omar E. Cornejo Mark Diekhans Daniel Doerr Peter Ebert Jana Ebler Evan E. Eichler Jordan M. Eizenga Susan Fairley Olivier Fedrigo Adam L. Felsenfeld Xiaowen Feng Christian Fischer Paul Flicek Giulio Formenti Adam Frankish Robert S. Fulton Yan Gao Shilpa Garg Erik Garrison Nanibaa’ A. Garrison Carlos Garcia Giron Richard E. Green Cristian Groza Andrea Guarracino Leanne Haggerty Ira M. Hall William T. Harvey Marina Haukness David Haussler Simon Heumos Glenn Hickey Kendra Hoekzema Thibaut Hourlier Kerstin Howe Miten Jain Erich D. Jarvis Hanlee P. Ji Eimear E. Kenny Barbara A. Koenig Alexey Kolesnikov Jan O. Korbel Jennifer Kordosky Sergey Koren HoJoon Lee Alexandra P. Lewis Heng Li Wen-Wei Liao Shuangjia Lu Tsung-Yu Lu Julian K. Lucas Hugo Magalhães Santiago Marco-Sola Pierre Marijon Charles Markello Tobias Marschall Fergal J. Martin Ann McCartney Jennifer McDaniel Karen H. Miga Matthew W. Mitchell Jean Monlong Jacquelyn Mountcastle Katherine M. Munson Moses Njagi Mwaniki Maria Nattestad Adam M. Novak Sergey Nurk Hugh E. Olsen Nathan D. Olson Benedict Paten Trevor Pesout Adam M. Phillippy Alice B. Popejoy David Porubsky Pjotr Prins Daniela Puiu Mikko Rautiainen Allison A. Regier Arang Rhie Samuel Sacco Ashley D. Sanders Valerie A. Schneider Baergen I. Schultz Kishwar Shafin Jonas A. Sibbesen Jouni Sirén Michael W. Smith Heidi J. Sofia Ahmad N. Abou Tayoun Françoise Thibaud-Nissen Chad Tomlinson Francesca Floriana Tricomi Flavia Villani Mitchell R. Vollger Justin Wagner Brian Walenz
  • ... [+123 authors] ...,
  • Ting Wang
  • Jonathan M.D. Wood
  • Aleksey V. Zimin
  • Justin M. Zook
  • First Published May 10, 2023
Research

Functional characterization of enhancer activity during a long terminal repeat's evolution

  • Alan Y. Du
  • Xiaoyu Zhuo
  • Vasavi Sundaram
  • Nicholas O. Jensen
  • Hemangi G. Chaudhari
  • Nancy L. Saccone
  • Barak A. Cohen
  • Ting Wang
  • First Published October 3, 2022
Research

A novel role for the Pol I transcription factor UBTF in maintaining genome stability through the regulation of highly transcribed Pol II genes

  • Elaine Sanij
  • Jeannine Diesch
  • Analia Lesmana
  • Gretchen Poortinga
  • Nadine Hein
  • Grace Lidgerwood Donald P. Cameron Jason Ellul Gregory J. Goodall Lee H. Wong Amardeep S. Dhillon Nourdine Hamdane Lawrence I. Rothblum
  • ... [+8 authors] ...,
  • Richard B. Pearson
  • Izhak Haviv
  • Tom Moss
  • Ross D. Hannan
  • First Published December 1, 2014
Research

Vascular histone deacetylation by pharmacological HDAC inhibition

  • Haloom Rafehi
  • Aneta Balcerczyk
  • Sebastian Lunke
  • Antony Kaspi
  • Mark Ziemann
  • Harikrishnan KN Jun Okabe Ishant Khurana Jenny Ooi Abdul Waheed Khan Xiao-Jun Du Lisa Chang
  • ... [+7 authors] ...,
  • Izhak Haviv
  • Samuel T. Keating
  • Tom C. Karagiannis
  • Assam El-Osta
  • First Published April 14, 2014
Research

Recurrent epimutations activate gene body promoters in primary glioblastoma

  • Raman P. Nagarajan
  • Bo Zhang
  • Robert J.A. Bell
  • Brett E. Johnson
  • Adam B. Olshen
  • Vasavi Sundaram Daofeng Li Ashley E. Graham Aaron Diaz Shaun D. Fouse Ivan Smirnov
  • ... [+6 authors] ...,
  • Jun Song
  • Pamela L. Paris
  • Ting Wang
  • Joseph F. Costello
  • First Published April 7, 2014
Research

Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells

  • Luciano Pirola
  • Aneta Balcerczyk
  • Richard W. Tothill
  • Izhak Haviv
  • Antony Kaspi
  • Sebastian Lunke Mark Ziemann Tom Karagiannis Stephen Tonna Adam Kowalczyk Bryan Beresford-Smith Geoff Macintyre
  • ... [+7 authors] ...,
  • Ma Kelong
  • Zhang Hongyu
  • Jingde Zhu
  • Assam El-Osta
  • First Published September 2, 2011
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