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Research

CRX retinopathy models" > Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models

Yiqiao Zheng
Gary D. Stormo
Shiming Chen

First Published December 23, 2024

Research

Embryonic LTR retrotransposons supply promoter modules to somatic tissues

Kosuke Hashimoto
Eeva-Mari Jouhilahti
Virpi Töhönen
Piero Carninci
Juha Kere
Shintaro Katayama

First Published October 21, 2021

Research

Antisense RNAs during early vertebrate development are divided in groups with distinct features

Sanjana Pillay
Hazuki Takahashi
Piero Carninci
Aditi Kanhere

First Published April 1, 2021

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Research

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Kosuke Hashimoto
Ana Maria Suzuki
Alexandre Dos Santos
Christophe Desterke
Agnese Collino
Serena Ghisletti Emilie Braun Alessandro Bonetti Alexandre Fort Xian-Yang Qin Enrico Radaelli Bogumil Kaczkowski Alistair R.R. Forrest Soichi Kojima Didier Samuel
... [+10 authors] ...,
Gioacchino Natoli
Marie Annick Buendia
Jamila Faivre
Piero Carninci

First Published October 28, 2015

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Research

Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants" > Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants

Metewo Selase Enuameh
Yuna Asriyan
Adam Richards
Ryan G. Christensen
Victoria L. Hall
Majid Kazemian Cong Zhu Hannah Pham Qiong Cheng Charles Blatti Jessie A. Brasefield Matthew D. Basciotta Jianhong Ou Joseph C. McNulty Lihua J. Zhu Susan E. Celniker
... [+11 authors] ...,
Saurabh Sinha
Gary D. Stormo
Michael H. Brodsky
Scot A. Wolfe

First Published March 7, 2013

Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

Research

Exploring the DNA-recognition potential of homeodomains

Stephanie W. Chu
Marcus B. Noyes
Ryan G. Christensen
Brian G. Pierce
Lihua J. Zhu
Zhiping Weng
Gary D. Stormo
Scot A. Wolfe

First Published April 26, 2012

Research

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

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