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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

Albert J. Vilella
Jessica Severin
Abel Ureta-Vidal
Li Heng
Richard Durbin
Ewan Birney

First Published November 24, 2008

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Heng Li
Jue Ruan
Richard Durbin

First Published August 19, 2008

Reconstructing contiguous regions of an ancestral genome

Jian Ma
Louxin Zhang
Bernard B. Suh
Brian J. Raney
Richard C. Burhans
W. James Kent
Mathieu Blanchette
David Haussler
Webb Miller

First Published September 18, 2006

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

Mathieu Blanchette
Alain R. Bataille
Xiaoyu Chen
Christian Poitras
Josée Laganière
Céline Lefèbvre Geneviève Deblois Vincent Giguère
... [+3 authors] ...,
Vincent Ferretti
Dominique Bergeron
Benoit Coulombe
François Robert

First Published April 10, 2006

GeneWise and Genomewise

Ewan Birney
Michele Clamp
Richard Durbin

First Published May 3, 2004

An Overview of Ensembl

Ewan Birney
T. Daniel Andrews
Paul Bevan
Mario Caccamo
Yuan Chen
Laura Clarke Guy Coates James Cuff Val Curwen Tim Cutts Thomas Down Eduardo Eyras Xose M. Fernandez-Suarez Paul Gane Brian Gibbins James Gilbert Martin Hammond Hans-Rudolf Hotz Vivek Iyer Kerstin Jekosch Andreas Kahari Arek Kasprzyk Damian Keefe Stephen Keenan Heikki Lehvaslaiho Graham McVicker Craig Melsopp Patrick Meidl Emmanuel Mongin Roger Pettett Simon Potter Glenn Proctor Mark Rae Steve Searle Guy Slater Damian Smedley James Smith Will Spooner Arne Stabenau James Stalker Roy Storey Abel Ureta-Vidal K. Cara Woodwark Graham Cameron
... [+39 authors] ...,
Richard Durbin
Anthony Cox
Tim Hubbard
Michele Clamp

First Published April 12, 2004

Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

Mathieu Blanchette
W. James Kent
Cathy Riemer
Laura Elnitski
Arian F.A. Smit
Krishna M. Roskin Robert Baertsch Kate Rosenbloom
... [+3 authors] ...,
Hiram Clawson
Eric D. Green
David Haussler
Webb Miller

First Published April 1, 2004