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Rapid whole-genome mutational profiling using next-generation sequencing technologies

Douglas R. Smith
Aaron R. Quinlan
Heather E. Peckham
Kathryn Makowsky
Wei Tao
Betty Woolf Lei Shen William F. Donahue Nadeem Tusneem Michael P. Stromberg Donald A. Stewart Lu Zhang Swati S. Ranade Jason B. Warner Clarence C. Lee Brittney E. Coleman Zheng Zhang Stephen F. McLaughlin Joel A. Malek Jon M. Sorenson Alan P. Blanchard Jarrod Chapman David Hillman Feng Chen Daniel S. Rokhsar
... [+20 authors] ...,
Kevin J. McKernan
Thomas W. Jeffries
Gabor T. Marth
Paul M. Richardson

First Published September 4, 2008

An MCMC algorithm for haplotype assembly from whole-genome sequence data

Vikas Bansal
Aaron L. Halpern
Nelson Axelrod
Vineet Bafna

First Published August 1, 2008

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Nitin Gupta
Jamal Benhamida
Vipul Bhargava
Daniel Goodman
Elisabeth Kain
Ian Kerman Ngan Nguyen Noah Ollikainen Jesse Rodriguez Jian Wang Mary S. Lipton
... [+6 authors] ...,
Margaret Romine
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published April 21, 2008

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Nitin Gupta
Stephen Tanner
Navdeep Jaitly
Joshua N. Adkins
Mary Lipton
Robert Edwards Margaret Romine
... [+2 authors] ...,
Andrei Osterman
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published August 9, 2007

Improving gene annotation using peptide mass spectrometry

Stephen Tanner
Zhouxin Shen
Julio Ng
Liliana Florea
Roderic Guigó
Steven P. Briggs
Vineet Bafna

First Published December 22, 2006

Evidence for large inversion polymorphisms in the human genome from HapMap data

Vikas Bansal
Ali Bashir
Vineet Bafna

First Published December 21, 2006