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Methods

Targeted discovery of novel human exons by comparative genomics

  • Adam Siepel
  • Mark Diekhans
  • Broňa Brejová
  • Laura Langton
  • Michael Stevens
  • Charles L.G. Comstock Colleen Davis Brent Ewing Shelly Oommen Christopher Lau Hung-Chun Yu Jianfeng Li Bruce A. Roe Phil Green
  • ... [+9 authors] ...,
  • Daniela S. Gerhard
  • Gary Temple
  • David Haussler
  • Michael R. Brent
  • First Published November 7, 2007
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • Webb Miller
  • Kate Rosenbloom
  • Ross C. Hardison
  • Minmei Hou
  • James Taylor
  • Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
  • ... [+17 authors] ...,
  • Eric S. Lander
  • Adam Siepel
  • David Haussler
  • W. James Kent
  • First Published November 5, 2007
Methods

Reconstructing contiguous regions of an ancestral genome

  • Jian Ma
  • Louxin Zhang
  • Bernard B. Suh
  • Brian J. Raney
  • Richard C. Burhans
  • W. James Kent
  • Mathieu Blanchette
  • David Haussler
  • Webb Miller
  • First Published September 18, 2006
RESOURCE

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

  • Ryan D. Morin
  • Elbert Chang
  • Anca Petrescu
  • Nancy Liao
  • Malachi Griffith
  • Robert Kirkpatrick Yaron S. Butterfield Alice C. Young Jeffrey Stott Sarah Barber Ryan Babakaiff Mark C. Dickson Corey Matsuo David Wong George S. Yang Duane E. Smailus Keith D. Wetherby Peggy N. Kwong Jane Grimwood Charles P. Brinkley Mabel Brown-John Natalie D. Reddix-Dugue Michael Mayo Jeremy Schmutz Jaclyn Beland Morgan Park Susan Gibson Teika Olson Gerard G. Bouffard Miranda Tsai Ruth Featherstone Steve Chand Asim S. Siddiqui Wonhee Jang Ed Lee Steven L. Klein Robert W. Blakesley Barry R. Zeeberg Sudarshan Narasimhan John N. Weinstein Christa Prange Pennacchio Richard M. Myers Eric D. Green Lukas Wagner
  • ... [+39 authors] ...,
  • Daniela S. Gerhard
  • Marco A. Marra
  • Steven J.M. Jones
  • Robert A. Holt
  • First Published May 3, 2006
RESOURCE

Exploring relationships and mining data with the UCSC Gene Sorter

  • W.J. Kent
  • Fan Hsu
  • Donna Karolchik
  • Robert M. Kuhn
  • Hiram Clawson
  • Heather Trumbower
  • David Haussler
  • First Published May 2, 2005
RESOURCE

Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

  • Mathieu Blanchette
  • W. James Kent
  • Cathy Riemer
  • Laura Elnitski
  • Arian F.A. Smit
  • Krishna M. Roskin Robert Baertsch Kate Rosenbloom
  • ... [+3 authors] ...,
  • Hiram Clawson
  • Eric D. Green
  • David Haussler
  • Webb Miller
  • First Published April 1, 2004
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