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ALLPATHS: De novo assembly of whole-genome shotgun microreads

Jonathan Butler
Iain MacCallum
Michael Kleber
Ilya A. Shlyakhter
Matthew K. Belmonte
Eric S. Lander
Chad Nusbaum
David B. Jaffe

First Published March 13, 2008

Quality scores and SNP detection in sequencing-by-synthesis systems

William Brockman
Pablo Alvarez
Sarah Young
Manuel Garber
Georgia Giannoukos
William L. Lee
... [+1 authors] ...,
Carsten Russ
Eric S. Lander
Chad Nusbaum
David B. Jaffe

First Published January 22, 2008

Initial sequence and comparative analysis of the cat genome

Joan U. Pontius
James C. Mullikin
Douglas R. Smith
Kerstin Lindblad-Toh
Sante Gnerre
Michele Clamp Jean Chang Robert Stephens Beena Neelam Natalia Volfovsky Alejandro A. Schäffer Richa Agarwala Kristina Narfström William J. Murphy Urs Giger Alfred L. Roca Agostinho Antunes Marilyn Menotti-Raymond Naoya Yuhki Jill Pecon-Slattery
... [+15 authors] ...,
Warren E. Johnson
Guillaume Bourque
Glenn Tesler
Stephen J. O’Brien

First Published November 1, 2007

The Ensembl Core Software Libraries

Arne Stabenau
Graham McVicker
Craig Melsopp
Glenn Proctor
Michele Clamp
Ewan Birney

First Published May 3, 2004

The Ensembl Analysis Pipeline

Simon C. Potter
Laura Clarke
Val Curwen
Stephen Keenan
Emmanuel Mongin
Stephen M.J. Searle
Arne Stabenau
Roy Storey
Michele Clamp

First Published May 3, 2004

The Ensembl Automatic Gene Annotation System

Val Curwen
Eduardo Eyras
T. Daniel Andrews
Laura Clarke
Emmanuel Mongin
Steven M.J. Searle
Michele Clamp

First Published May 3, 2004

The Otter Annotation System

Stephen M.J. Searle
James Gilbert
Vivek Iyer
Michele Clamp

First Published May 3, 2004

ESTGenes: Alternative Splicing From ESTs in Ensembl

Eduardo Eyras
Mario Caccamo
Val Curwen
Michele Clamp

First Published May 3, 2004

GeneWise and Genomewise

Ewan Birney
Michele Clamp
Richard Durbin

First Published May 3, 2004

An Overview of Ensembl

Ewan Birney
T. Daniel Andrews
Paul Bevan
Mario Caccamo
Yuan Chen
Laura Clarke Guy Coates James Cuff Val Curwen Tim Cutts Thomas Down Eduardo Eyras Xose M. Fernandez-Suarez Paul Gane Brian Gibbins James Gilbert Martin Hammond Hans-Rudolf Hotz Vivek Iyer Kerstin Jekosch Andreas Kahari Arek Kasprzyk Damian Keefe Stephen Keenan Heikki Lehvaslaiho Graham McVicker Craig Melsopp Patrick Meidl Emmanuel Mongin Roger Pettett Simon Potter Glenn Proctor Mark Rae Steve Searle Guy Slater Damian Smedley James Smith Will Spooner Arne Stabenau James Stalker Roy Storey Abel Ureta-Vidal K. Cara Woodwark Graham Cameron
... [+39 authors] ...,
Richard Durbin
Anthony Cox
Tim Hubbard
Michele Clamp

First Published April 12, 2004