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MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

  • Brandi L. Cantarel
  • Ian Korf
  • Sofia M.C. Robb
  • Genis Parra
  • Eric Ross
  • Barry Moore
  • Carson Holt
  • Alejandro Sánchez Alvarado
  • Mark Yandell
  • First Published November 19, 2007

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

  • Ghia M. Euskirchen
  • Joel S. Rozowsky
  • Chia-Lin Wei
  • Wah Heng Lee
  • Zhengdong D. Zhang
  • Stephen Hartman Olof Emanuelsson Viktor Stolc
  • ... [+3 authors] ...,
  • Sherman Weissman
  • Mark B. Gerstein
  • Yijun Ruan
  • Michael Snyder
  • First Published June 13, 2007

What is a gene, post-ENCODE? History and updated definition

  • Mark B. Gerstein
  • Can Bruce
  • Joel S. Rozowsky
  • Deyou Zheng
  • Jiang Du
  • Jan O. Korbel
  • ... [+1 authors] ...,
  • Olof Emanuelsson
  • Zhengdong D. Zhang
  • Sherman Weissman
  • Michael Snyder
  • First Published June 13, 2007

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

  • Olof Emanuelsson
  • Ugrappa Nagalakshmi
  • Deyou Zheng
  • Joel S. Rozowsky
  • Alexander E. Urban
  • Jiang Du Zheng Lian
  • ... [+2 authors] ...,
  • Viktor Stolc
  • Sherman Weissman
  • Michael Snyder
  • Mark B. Gerstein
  • First Published November 21, 2006

Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon

  • Anuj Kumar
  • Michael Seringhaus
  • Matthew C. Biery
  • Robert J. Sarnovsky
  • Lara Umansky
  • Stacy Piccirillo Matthew Heidtman Kei-Hoi Cheung
  • ... [+3 authors] ...,
  • Craig J. Dobry
  • Mark B. Gerstein
  • Nancy L. Craig
  • Michael Snyder
  • First Published October 1, 2004
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