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Methods

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Nitin Gupta
Jamal Benhamida
Vipul Bhargava
Daniel Goodman
Elisabeth Kain
Ian Kerman Ngan Nguyen Noah Ollikainen Jesse Rodriguez Jian Wang Mary S. Lipton
... [+6 authors] ...,
Margaret Romine
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published April 21, 2008

Methods

Short read fragment assembly of bacterial genomes

Mark J. Chaisson
Pavel A. Pevzner

First Published December 14, 2007

Methods

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Nitin Gupta
Stephen Tanner
Navdeep Jaitly
Joshua N. Adkins
Mary Lipton
Robert Edwards Margaret Romine
... [+2 authors] ...,
Andrei Osterman
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published August 9, 2007

Methods

Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics

Jason Gertz
Linda Riles
Peter Turnbaugh
Su-Wen Ho
Barak A. Cohen

First Published August 2, 2005