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Methods

Genome-wide nucleotide-level mammalian ancestor reconstruction

  • Benedict Paten
  • Javier Herrero
  • Stephen Fitzgerald
  • Kathryn Beal
  • Paul Flicek
  • Ian Holmes
  • Ewan Birney
  • First Published October 10, 2008
Methods

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • James Taylor
  • Svitlana Tyekucheva
  • David C. King
  • Ross C. Hardison
  • Webb Miller
  • Francesca Chiaromonte
  • First Published October 19, 2006
Methods

Reconstructing contiguous regions of an ancestral genome

  • Jian Ma
  • Louxin Zhang
  • Bernard B. Suh
  • Brian J. Raney
  • Richard C. Burhans
  • W. James Kent
  • Mathieu Blanchette
  • David Haussler
  • Webb Miller
  • First Published September 18, 2006
Methods

Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat

  • Diana Kolbe
  • James Taylor
  • Laura Elnitski
  • Pallavi Eswara
  • Jia Li
  • Webb Miller
  • Ross Hardison
  • Francesca Chiaromonte
  • First Published April 1, 2004
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