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Methods

Predicting tissue-specific enhancers in the human genome

  • Len A. Pennacchio
  • Gabriela G. Loots
  • Marcelo A. Nobrega
  • Ivan Ovcharenko
  • First Published January 8, 2007
Methods

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • James Taylor
  • Svitlana Tyekucheva
  • David C. King
  • Ross C. Hardison
  • Webb Miller
  • Francesca Chiaromonte
  • First Published October 19, 2006
Methods

Reconstructing contiguous regions of an ancestral genome

  • Jian Ma
  • Louxin Zhang
  • Bernard B. Suh
  • Brian J. Raney
  • Richard C. Burhans
  • W. James Kent
  • Mathieu Blanchette
  • David Haussler
  • Webb Miller
  • First Published September 18, 2006
Methods

Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat

  • Diana Kolbe
  • James Taylor
  • Laura Elnitski
  • Pallavi Eswara
  • Jia Li
  • Webb Miller
  • Ross Hardison
  • Francesca Chiaromonte
  • First Published April 1, 2004
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