Search | Genome Research

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Method

Analytical validation of germline small variant detection using long-read HiFi genome sequencing

Nathan Hammond
Linda Liao
Pun Wai Tong
Zena Ng
Thuy-Mi P. Nguyen
Chandler Ho
Yao Yang
Stuart A. Scott

First Published April 11, 2025

Method

An efficient genotyper and star-allele caller for pharmacogenomics

Ananth Hari
Qinghui Zhou
Nina Gonzaludo
John Harting
Stuart A. Scott
Xiang Qin
Steve Scherer
S. Cenk Sahinalp
Ibrahim Numanagić

First Published January 19, 2023

Method

Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression

Yipeng Gao
Lei Li
Christopher I. Amos
Wei Li

First Published May 25, 2021

Method

Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing

Shilin Zhang
Yichen Wang
Lin Jia
Xue Wen
Zhonghua Du
Cong Wang Yajing Hao Dehai Yu Lei Zhou Naifei Chen Jingcheng Chen Huiling Chen Hui Zhang Ilkay Celik Günhan Gülsoy Jianjun Luo Baoming Qin Xueling Cui Zhonghui Liu Songling Zhang Miguel A. Esteban Ferhat Ay Wei Xu Runsheng Chen
... [+19 authors] ...,
Wei Li
Andrew R. Hoffman
Ji-Fan Hu
Jiuwei Cui

First Published July 17, 2019

Method

A novel synthetic-genetic-array–based yeast one-hybrid system for high discovery rate and short processing time

Chung-Shu Yeh
Zhifeng Wang
Fang Miao
Hongyan Ma
Chung-Ting Kao
Tzu-Shu Hsu Jhong-He Yu Er-Tsi Hung Chia-Chang Lin Chen-Yu Kuan Ni-Chiao Tsai Chenguang Zhou Guan-Zheng Qu Jing Jiang Guifeng Liu Jack P. Wang
... [+11 authors] ...,
Wei Li
Vincent L. Chiang
Tien-Hsien Chang
Ying-Chung Jimmy Lin

First Published June 11, 2019

Method

Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks

Jin Li
Yan Li
Wei Li
Huaibing Luo
Yanping Xi
Shihua Dong Ming Gao Peng Xu Baolong Zhang Ying Liang Qingping Zou Xin Hu Lina Peng Dan Zou Ting Wang Hongbo Yang
... [+11 authors] ...,
Cizhong Jiang
Shaoliang Peng
Feizhen Wu
Wenqiang Yu

First Published January 22, 2019

Method

DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing

Kaifu Chen
Yuanxin Xi
Xuewen Pan
Zhaoyu Li
Klaus Kaestner
Jessica Tyler
Sharon Dent
Xiangwei He
Wei Li

First Published November 28, 2012