Search | Genome Research

Your search for returned 7 results

Method

Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding

Dmitry Antipov
Mikko Rautiainen
Sergey Nurk
Brian P. Walenz
Steven J. Solar
Adam M. Phillippy
Sergey Koren

First Published May 19, 2025

Method

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Sergey Koren
Zhigui Bao
Andrea Guarracino
Shujun Ou
Sara Goodwin
Katharine M. Jenike Julian Lucas Brandy McNulty Jimin Park Mikko Rautiainen Arang Rhie Dick Roelofs Harrie Schneiders Ilse Vrijenhoek Koen Nijbroek Olle Nordesjo Sergey Nurk Mike Vella Katherine R. Lawrence Doreen Ware Michael C. Schatz Erik Garrison Sanwen Huang
... [+18 authors] ...,
William Richard McCombie
Karen H. Miga
Alexander H.J. Wittenberg
Adam M. Phillippy

First Published November 6, 2024

Method

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Sergey Nurk
Brian P. Walenz
Arang Rhie
Mitchell R. Vollger
Glennis A. Logsdon
Robert Grothe
... [+1 authors] ...,
Karen H. Miga
Evan E. Eichler
Adam M. Phillippy
Sergey Koren

First Published August 14, 2020

Method

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk
Dmitry Meleshko
Anton Korobeynikov
Pavel A. Pevzner

First Published March 15, 2017

Method

SMASH, a fragmentation and sequencing method for genomic copy number analysis

Zihua Wang
Peter Andrews
Jude Kendall
Beicong Ma
Inessa Hakker
Linda Rodgers
Michael Ronemus
Michael Wigler
Dan Levy

First Published April 14, 2016

Method

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

Timour Baslan
Jude Kendall
Brian Ward
Hilary Cox
Anthony Leotta
Linda Rodgers Michael Riggs Sean D'Italia Guoli Sun Mao Yong Kristy Miskimen Hannah Gilmore Michael Saborowski Nevenka Dimitrova
... [+9 authors] ...,
Alexander Krasnitz
Lyndsay Harris
Michael Wigler
James Hicks

First Published April 9, 2015

Method

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Jeffrey S. McLean
Mary-Jane Lombardo
Michael G. Ziegler
Mark Novotny
Joyclyn Yee-Greenbaum
Jonathan H. Badger Glenn Tesler Sergey Nurk Valery Lesin Daniel Brami Adam P. Hall Anna Edlund Lisa Z. Allen Scott Durkin Sharon Reed Francesca Torriani Kenneth H. Nealson
... [+12 authors] ...,
Pavel A. Pevzner
Robert Friedman
J. Craig Venter
Roger S. Lasken

First Published April 5, 2013