Method
Optimizing nanopore adaptive sampling for pneumococcal serotype surveillance in complex samples using the graph-based GNASTy algorithm
- First Published March 4, 2025
Method
k-mer analysis" > Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis
- First Published October 15, 2024
Method
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
- First Published August 12, 2024
Method
Accurate and fast graph-based pangenome annotation and clustering with ggCaller
- First Published August 24, 2023
Method
Genealogical inference and more flexible sequence clustering using iterative-PopPUNK
- First Published May 30, 2023
Method
Variational inference using approximate likelihood under the coalescent with recombination
- First Published August 23, 2021
Method
SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data
- First Published October 18, 2019
Method
Fast and flexible bacterial genomic epidemiology with PopPUNK
- First Published January 24, 2019
Method
HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies
- First Published January 19, 2017