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Method

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

Kaiyuan Zhu
Matthew G. Jones
Jens Luebeck
Xinxin Bu
Hyerim Yi
King L. Hung Ivy Tsz-Lo Wong
... [+2 authors] ...,
Shu Zhang
Paul S. Mischel
Howard Y. Chang
Vineet Bafna

First Published July 9, 2024

Method

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

Helena M.B. Seth-Smith
Simon R. Harris
Rachel J. Skilton
Frans M. Radebe
Daniel Golparian
Elena Shipitsyna Pham Thanh Duy Paul Scott Lesley T. Cutcliffe Colette O’Neill Surendra Parmar Rachel Pitt Stephen Baker Catherine A. Ison Peter Marsh Hamid Jalal David A. Lewis
... [+12 authors] ...,
Magnus Unemo
Ian N. Clarke
Julian Parkhill
Nicholas R. Thomson

First Published March 22, 2013

Method

SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

Zhengqing Ouyang
Michael P. Snyder
Howard Y. Chang

First Published October 11, 2012