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Method

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

Kaixuan Luo
Jianling Zhong
Alexias Safi
Linda K. Hong
Alok K. Tewari
Lingyun Song
... [+1 authors] ...,
Timothy E. Reddy
Li Ma
Gregory E. Crawford
Alexander J. Hartemink

First Published May 24, 2022

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Method

Mapping nucleosome positions using DNase-seq

Jianling Zhong
Kaixuan Luo
Peter S. Winter
Gregory E. Crawford
Edwin S. Iversen
Alexander J. Hartemink

First Published January 15, 2016

Method

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

Michael S. Fitzsimons
Mark Novotny
Chien-Chi Lo
Armand E.K. Dichosa
Joyclyn L. Yee-Greenbaum
Jeremy P. Snook Wei Gu Olga Chertkov Karen W. Davenport Kim McMurry Krista G. Reitenga Ashlynn R. Daughton Jian He Shannon L. Johnson Cheryl D. Gleasner Patti L. Wills Beverly Parson-Quintana
... [+12 authors] ...,
Patrick S. Chain
John C. Detter
Roger S. Lasken
Cliff S. Han

First Published March 14, 2013

Method

Predicting cell-type–specific gene expression from regions of open chromatin

Anirudh Natarajan
Galip Gürkan Yardımcı
Nathan C. Sheffield
Gregory E. Crawford
Uwe Ohler

First Published September 5, 2012

Method

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

Alan P. Boyle
Lingyun Song
Bum-Kyu Lee
Darin London
Damian Keefe
Ewan Birney
Vishwanath R. Iyer
Gregory E. Crawford
Terrence S. Furey

First Published November 24, 2010