Method
Multicondition and multimodal temporal profile inference during mouse embryonic development
- First Published August 14, 2025
Method
Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories
- First Published September 25, 2024
Method
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools
- First Published June 7, 2024
Method
Ancestry-agnostic estimation of DNA sample contamination from sequence reads
- First Published January 24, 2020
Method
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- First Published August 30, 2017
Method
An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data
- First Published April 16, 2015
Method
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
- First Published February 12, 2015
Method
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- First Published February 5, 2014
Method
Sequence and chromatin determinants of cell-type–specific transcription factor binding
- First Published September 5, 2012