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Method

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Method

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

Martin Stroedicke
Yacine Bounab
Nadine Strempel
Konrad Klockmeier
Sargon Yigit
Ralf P. Friedrich Gautam Chaurasia Shuang Li Franziska Hesse Sean-Patrick Riechers Jenny Russ Cecilia Nicoletti Annett Boeddrich Thomas Wiglenda Christian Haenig Sigrid Schnoegl David Fournier Rona K. Graham Michael R. Hayden Stephan Sigrist Gillian P. Bates
... [+16 authors] ...,
Josef Priller
Miguel A. Andrade-Navarro
Matthias E. Futschik
Erich E. Wanker

First Published April 23, 2015

Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

David U. Gorkin
Dongwon Lee
Xylena Reed
Christopher Fletez-Brant
Seneca L. Bessling
Stacie K. Loftus
Michael A. Beer
William J. Pavan
Andrew S. McCallion

First Published September 27, 2012

Method

Discriminative prediction of mammalian enhancers from DNA sequence

Dongwon Lee
Rachel Karchin
Michael A. Beer

First Published August 29, 2011