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Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching

  • Mengjie Chen
  • Qi Zhan
  • Zepeng Mu
  • Lili Wang
  • Zhaohui Zheng
  • Jinlin Miao
  • Ping Zhu
  • Yang I. Li
  • First Published March 19, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Method

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

  • Hongshan Guo
  • Ping Zhu
  • Xinglong Wu
  • Xianlong Li
  • Lu Wen
  • Fuchou Tang
  • First Published October 31, 2013
Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

  • David U. Gorkin
  • Dongwon Lee
  • Xylena Reed
  • Christopher Fletez-Brant
  • Seneca L. Bessling
  • Stacie K. Loftus
  • Michael A. Beer
  • William J. Pavan
  • Andrew S. McCallion
  • First Published September 27, 2012
Method

Discriminative prediction of mammalian enhancers from DNA sequence

  • Dongwon Lee
  • Rachel Karchin
  • Michael A. Beer
  • First Published August 29, 2011
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