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Method

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Method

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

Matteo J. Marzi
Francesco Ghini
Benedetta Cerruti
Stefano de Pretis
Paola Bonetti
Chiara Giacomelli Marcin M. Gorski Theresia Kress
... [+3 authors] ...,
Mattia Pelizzola
Heiko Muller
Bruno Amati
Francesco Nicassio

First Published January 28, 2016

Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

David U. Gorkin
Dongwon Lee
Xylena Reed
Christopher Fletez-Brant
Seneca L. Bessling
Stacie K. Loftus
Michael A. Beer
William J. Pavan
Andrew S. McCallion

First Published September 27, 2012

Method

Discriminative prediction of mammalian enhancers from DNA sequence

Dongwon Lee
Rachel Karchin
Michael A. Beer

First Published August 29, 2011