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Method

k-mer manifold approximation and projection for visualizing DNA sequences" > k-mer manifold approximation and projection for visualizing DNA sequences

  • Chengbo Fu
  • Einari A. Niskanen
  • Gong-Hong Wei
  • Zhirong Yang
  • Marta Sanvicente-García
  • Marc Güell
  • Lu Cheng
  • First Published April 10, 2025
Method

Sequence-based correction of barcode bias in massively parallel reporter assays

  • Dongwon Lee
  • Ashish Kapoor
  • Changhee Lee
  • Michael Mudgett
  • Michael A. Beer
  • Aravinda Chakravarti
  • First Published July 20, 2021
Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018
Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

  • David U. Gorkin
  • Dongwon Lee
  • Xylena Reed
  • Christopher Fletez-Brant
  • Seneca L. Bessling
  • Stacie K. Loftus
  • Michael A. Beer
  • William J. Pavan
  • Andrew S. McCallion
  • First Published September 27, 2012
Method

Discriminative prediction of mammalian enhancers from DNA sequence

  • Dongwon Lee
  • Rachel Karchin
  • Michael A. Beer
  • First Published August 29, 2011
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