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Method

Partial alignment of multislice spatially resolved transcriptomics data

  • Xinhao Liu
  • Ron Zeira
  • Benjamin J. Raphael
  • First Published August 8, 2023
Method

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

  • Sergey Aganezov
  • Benjamin J. Raphael
  • First Published September 4, 2020
Method

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

  • Steve Miller
  • Samia N. Naccache
  • Erik Samayoa
  • Kevin Messacar
  • Shaun Arevalo
  • Scot Federman Doug Stryke Elizabeth Pham Becky Fung William J. Bolosky Danielle Ingebrigtsen Walter Lorizio Sandra M. Paff John A. Leake
  • ... [+9 authors] ...,
  • Rick Pesano
  • Roberta DeBiasi
  • Samuel Dominguez
  • Charles Y. Chiu
  • First Published April 16, 2019
Method

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

  • Jack Kuipers
  • Katharina Jahn
  • Benjamin J. Raphael
  • Niko Beerenwinkel
  • First Published October 13, 2017
Method

De novo discovery of mutated driver pathways in cancer

  • Fabio Vandin
  • Eli Upfal
  • Benjamin J. Raphael
  • First Published June 7, 2011
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