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Your search for returned 8 results

Method

Partial alignment of multislice spatially resolved transcriptomics data

Xinhao Liu
Ron Zeira
Benjamin J. Raphael

First Published August 8, 2023

Method

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Method

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

Sergey Aganezov
Benjamin J. Raphael

First Published September 4, 2020

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

Method

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

Jack Kuipers
Katharina Jahn
Benjamin J. Raphael
Niko Beerenwinkel

First Published October 13, 2017

Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

David U. Gorkin
Dongwon Lee
Xylena Reed
Christopher Fletez-Brant
Seneca L. Bessling
Stacie K. Loftus
Michael A. Beer
William J. Pavan
Andrew S. McCallion

First Published September 27, 2012

Method

Discriminative prediction of mammalian enhancers from DNA sequence

Dongwon Lee
Rachel Karchin
Michael A. Beer

First Published August 29, 2011

Method

De novo discovery of mutated driver pathways in cancer

Fabio Vandin
Eli Upfal
Benjamin J. Raphael

First Published June 7, 2011