Search | Genome Research

CL_GR_CellEng_728x90

Your search for returned 8 results

Method

Multi–cell type gene coexpression network analysis reveals coordinated interferon response and cross–cell type correlations in systemic lupus erythematosus

Bharat Panwar
Benjamin J. Schmiedel
Shu Liang
Brandie White
Enrique Rodriguez
Kenneth Kalunian Andrew J. McKnight
... [+2 authors] ...,
Rachel Soloff
Gregory Seumois
Pandurangan Vijayanand
Ferhat Ay

First Published March 5, 2021

Method

Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing

Shilin Zhang
Yichen Wang
Lin Jia
Xue Wen
Zhonghua Du
Cong Wang Yajing Hao Dehai Yu Lei Zhou Naifei Chen Jingcheng Chen Huiling Chen Hui Zhang Ilkay Celik Günhan Gülsoy Jianjun Luo Baoming Qin Xueling Cui Zhonghui Liu Songling Zhang Miguel A. Esteban Ferhat Ay Wei Xu Runsheng Chen
... [+19 authors] ...,
Wei Li
Andrew R. Hoffman
Ji-Fan Hu
Jiuwei Cui

First Published July 17, 2019

Method

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

Maxwell W. Libbrecht
Ferhat Ay
Michael M. Hoffman
David M. Gilbert
Jeffrey A. Bilmes
William Stafford Noble

First Published February 12, 2015

Method

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

Ferhat Ay
Timothy L. Bailey
William Stafford Noble

First Published February 5, 2014

Method

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

David U. Gorkin
Dongwon Lee
Xylena Reed
Christopher Fletez-Brant
Seneca L. Bessling
Stacie K. Loftus
Michael A. Beer
William J. Pavan
Andrew S. McCallion

First Published September 27, 2012

Method

Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control

Grzegorz M. Burzynski
Xylena Reed
Leila Taher
Zachary E. Stine
Takeshi Matsui
Ivan Ovcharenko
Andrew S. McCallion

First Published July 3, 2012

Method

Drosophila melanogaster by integrative inference of transcriptional networks" > Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

Daniel Marbach
Sushmita Roy
Ferhat Ay
Patrick E. Meyer
Rogerio Candeias
Tamer Kahveci
Christopher A. Bristow
Manolis Kellis

First Published March 28, 2012

Method

Genome-wide identification of conserved regulatory function in diverged sequences

Leila Taher
David M. McGaughey
Samantha Maragh
Ivy Aneas
Seneca L. Bessling
Webb Miller
Marcelo A. Nobrega
Andrew S. McCallion
Ivan Ovcharenko

First Published May 31, 2011