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METHODS

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

  • Michael Brudno
  • Chuong B. Do
  • Gregory M. Cooper
  • Michael F. Kim
  • Eugene Davydov
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Arend Sidow
  • Serafim Batzoglou
  • First Published March 12, 2003
METHODS

SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model

  • Marina Alexandersson
  • Simon Cawley
  • Lior Pachter
  • First Published February 12, 2003
METHODS

AVID: A Global Alignment Program

  • Nick Bray
  • Inna Dubchak
  • Lior Pachter
  • First Published December 30, 2002
METHODS

rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites" > rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites

  • Gabriela G. Loots
  • Ivan Ovcharenko
  • Lior Pachter
  • Inna Dubchak
  • Edward M. Rubin
  • First Published April 12, 2002
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